Publikationer

A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile r package for paralogue and CNV detection

Karunarathne, Piyal; Zhou, Qiujie; Schliep, Klaus; Milesi, Pascal

Ingår i Molecular Ecology Resources, s. 1772-1789, 2023.

DOI för A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile r package for paralogue and CNV detection

Between but Not Within-Species Variation in the Distribution of Fitness Effects

James, Jennifer; Kastally, Chedly; Budde, Katharina B; González-Martínez, Santiago C et al.

Ingår i Molecular biology and evolution, 2023.

DOI för Between but Not Within-Species Variation in the Distribution of Fitness Effects

Divergent selection predating the Last Glacial Maximum mainly acted on macro‐phenotypes in Norway spruce

Tiret, Mathieu; Olsson, Lars; Grahn, Thomas; Karlsson, Bo et al.

Ingår i Evolutionary Applications, s. 163-172, 2023.

DOI för Divergent selection predating the Last Glacial Maximum mainly acted on macro‐phenotypes in Norway spruce Ladda ner fulltext (pdf) av Divergent selection predating the Last Glacial Maximum mainly acted on macro‐phenotypes in Norway spruce

Diversity and enrichment of breeding material for resilience in European forests

Olsson, Sanna; Dauphin, Benjamin; Jorge, Veronique; Grivet, Delphine et al.

Ingår i Forest Ecology and Management, 2023.

DOI för Diversity and enrichment of breeding material for resilience in European forests Ladda ner fulltext (pdf) av Diversity and enrichment of breeding material for resilience in European forests

Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences

Leal, Luis J.; Milesi, Pascal; Salojarvi, Jarkko; Lascoux, Martin

Ingår i Systematic Biology, s. 372-390, 2023.

DOI för Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences Ladda ner fulltext (pdf) av Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences

BioRssay: an R package for analyses of bioassays and probit graphs

Karunarathne, Piyal; Pocquet, Nicolas; Labbe, Pierrick; Milesi, Pascal

Ingår i Parasites & Vectors, 2022.

DOI för BioRssay: an R package for analyses of bioassays and probit graphs Ladda ner fulltext (pdf) av BioRssay: an R package for analyses of bioassays and probit graphs

Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes

Milesi, Pascal; Claret, Jean-Loup; Unal, Sandra; Weill, Mylène et al.

Ingår i Parasites & Vectors, 2022.

DOI för Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes Ladda ner fulltext (pdf) av Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes

Genomics and adaptation in forest ecosystems

Neophytou, Charalambos; Heer, Katrin; Milesi, Pascal; Peter, Martina et al.

Ingår i Tree Genetics & Genomes, 2022.

DOI för Genomics and adaptation in forest ecosystems Ladda ner fulltext (pdf) av Genomics and adaptation in forest ecosystems

How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus

Zhang, Zebin; Kryvokhyzha, Dmytro; Orsucci, Marion; Glemin, Sylvain et al.

Ingår i New Phytologist, s. 2344-2357, 2022.

DOI för How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus Ladda ner fulltext (pdf) av How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus

Norway spruce postglacial recolonization of Fennoscandia

Nota, Kevin; Klaminder, Jonatan; Milesi, Pascal; Bindler, Richard et al.

Ingår i Nature Communications, 2022.

DOI för Norway spruce postglacial recolonization of Fennoscandia Ladda ner fulltext (pdf) av Norway spruce postglacial recolonization of Fennoscandia

Teasing apart the joint effect of demography and natural selection in the birth of a contact zone

Li, Lili; Milesi, Pascal; Tiret, Mathieu; Chen, Jun et al.

Ingår i New Phytologist, s. 1976-1987, 2022.

DOI för Teasing apart the joint effect of demography and natural selection in the birth of a contact zone Ladda ner fulltext (pdf) av Teasing apart the joint effect of demography and natural selection in the birth of a contact zone

The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe

Cornille, Amandine; Tiret, Mathieu; Salcedo, Adriana; Huang, Huirun R. et al.

Ingår i AoB Plants, 2022.

DOI för The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe Ladda ner fulltext (pdf) av The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe

Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce

Capador‐Barreto, Hernán D.; Bernhardsson, Carolina; Milesi, Pascal; Vos, Ingrid et al.

Ingår i Molecular Ecology, s. 4433-4447, 2021.

DOI för Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce Ladda ner fulltext (pdf) av Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce

Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis

Chen, Zhi-Qiang; Zan, Yanjun; Milesi, Pascal; Zhou, Linghua et al.

Ingår i Genome Biology, 2021.

DOI för Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis Ladda ner fulltext (pdf) av Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis

The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe

Benavides, Raquel; Carvalho, Barbara; Bastias, Cristina C.; Lopez-Quiroga, David et al.

Ingår i Global Ecology and Biogeography, s. 590-597, 2021.

DOI för The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe Ladda ner fulltext (pdf) av The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe

The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

Opgenoorth, Lars; Benjamin, Dauphin; Benavides, Raquel; Heer, Katrin et al.

Ingår i GigaScience, 2021.

DOI för The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species Ladda ner fulltext (pdf) av The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load

Orsucci, Marion; Milesi, Pascal; Hansen, Johanna; Girodolle, Johanna et al.

Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2020.

DOI för Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load Ladda ner fulltext (pdf) av Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load

Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

Milesi, Pascal; Berlin, Mats; Chen, Jun; Orsucci, Marion et al.

Ingår i Evolutionary Applications, s. 1946-1959, 2019.

DOI för Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees Ladda ner fulltext (pdf) av Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce

Chen, Jun; Li, Lili; Milesi, Pascal; Jansson, Gunnar et al.

Ingår i Evolutionary Applications, s. 1539-1551, 2019.

DOI för Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce Ladda ner fulltext (pdf) av Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce

High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island

Latreille, Anne C.; Milesi, Pascal; Magalon, Hélène; Mavingui, Patrick et al.

Ingår i Parasites & Vectors, 2019.

DOI för High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island Ladda ner fulltext (pdf) av High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island

Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)

Kryvokhyzha, Dmytro; Milesi, Pascal; Duan, Tianlin; Orsucci, Marion et al.

Ingår i PLOS Genetics, 2019.

DOI för Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris) Ladda ner fulltext (pdf) av Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)

The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation

Milesi, Pascal; Assogba, Benoit S.; Atyame, Celestine M.; Pocquet, Nicolas et al.

Ingår i Molecular Ecology, s. 493-507, 2018.

DOI för The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation Ladda ner fulltext (pdf) av The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation

Towards the new normal: Genomic and transcriptomic changes in the two subgenomes of a 100,000 years old tetraploid, Capsella bursa-pastoris

Kryvokhyzha, Dmytro; Duan, Tianlin; Orsucci, Marion; Milesi, Pascal et al.

2018.

Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management

Söderquist, Linus; Joffard, Nina; Scofield, Douglas; Milesi, Pascal et al.

Recent introductions, ancient recolonization events and local adaptation: a first fine-scale mapping of the population genetic structure of Norway spruce across Sweden

Li, Lili; Milesi, Pascal; Chen, Jun; Baison, John et al.