Publications

BioRssay: an R package for analyses of bioassays and probit graphs

Karunarathne, Piyal; Pocquet, Nicolas; Labbe, Pierrick; Milesi, Pascal

Part of Parasites & Vectors, 2022.

DOI for BioRssay: an R package for analyses of bioassays and probit graphs Download full text (pdf) of BioRssay: an R package for analyses of bioassays and probit graphs

Divergent selection predating the Last Glacial Maximum mainly acted on macro‐phenotypes in Norway spruce

Tiret, Mathieu; Olsson, Lars; Grahn, Thomas; Karlsson, Bo et al.

Part of Evolutionary Applications, 2022.

DOI for Divergent selection predating the Last Glacial Maximum mainly acted on macro‐phenotypes in Norway spruce

Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes

Milesi, Pascal; Claret, Jean-Loup; Unal, Sandra; Weill, Mylène et al.

Part of Parasites & Vectors, 2022.

DOI for Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes Download full text (pdf) of Evolutionary trade-offs associated with copy number variations in resistance alleles in Culex pipiens mosquitoes

Genomics and adaptation in forest ecosystems

Neophytou, Charalambos; Heer, Katrin; Milesi, Pascal; Peter, Martina et al.

Part of Tree Genetics & Genomes, 2022.

DOI for Genomics and adaptation in forest ecosystems Download full text (pdf) of Genomics and adaptation in forest ecosystems

How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus

Zhang, Zebin; Kryvokhyzha, Dmytro; Orsucci, Marion; Glémin, Sylvain et al.

Part of New Phytologist, p. 2344-2357, 2022.

DOI for How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus

Norway spruce postglacial recolonization of Fennoscandia

Nota, Kevin; Klaminder, Jonatan; Milesi, Pascal; Bindler, Richard et al.

Part of Nature Communications, 2022.

DOI for Norway spruce postglacial recolonization of Fennoscandia Download full text (pdf) of Norway spruce postglacial recolonization of Fennoscandia

Teasing apart the joint effect of demography and natural selection in the birth of a contact zone

Li, Lili; Milesi, Pascal; Tiret, Mathieu; Chen, Jun et al.

Part of New Phytologist, p. 1976-1987, 2022.

DOI for Teasing apart the joint effect of demography and natural selection in the birth of a contact zone Download full text (pdf) of Teasing apart the joint effect of demography and natural selection in the birth of a contact zone

The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe

Cornille, Amandine; Tiret, Mathieu; Salcedo, Adriana; Huang, Huirun R. et al.

Part of AoB Plants, 2022.

DOI for The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe Download full text (pdf) of The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe

Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce

Capador‐Barreto, Hernán D.; Bernhardsson, Carolina; Milesi, Pascal; Vos, Ingrid et al.

Part of Molecular Ecology, p. 4433-4447, 2021.

DOI for Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce Download full text (pdf) of Killing two enemies with one stone?: Genomics of resistance to two sympatric pathogens in Norway spruce

Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis

Chen, Zhi-Qiang; Zan, Yanjun; Milesi, Pascal; Zhou, Linghua et al.

Part of Genome Biology, 2021.

DOI for Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis Download full text (pdf) of Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis

The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe

Benavides, Raquel; Carvalho, Barbara; Bastias, Cristina C.; Lopez-Quiroga, David et al.

Part of Global Ecology and Biogeography, p. 590-597, 2021.

DOI for The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe Download full text (pdf) of The GenTree Leaf Collection: Inter- and intraspecific leaf variation in seven forest tree species in Europe

The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

Opgenoorth, Lars; Benjamin, Dauphin; Benavides, Raquel; Heer, Katrin et al.

Part of GigaScience, 2021.

DOI for The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species Download full text (pdf) of The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species

Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load

Orsucci, Marion; Milesi, Pascal; Hansen, Johanna; Girodolle, Johanna et al.

Part of Proceedings of the Royal Society of London. Biological Sciences, 2020.

DOI for Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load Download full text (pdf) of Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load

Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

Milesi, Pascal; Berlin, Mats; Chen, Jun; Orsucci, Marion et al.

Part of Evolutionary Applications, p. 1946-1959, 2019.

DOI for Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees Download full text (pdf) of Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees

Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce

Chen, Jun; Li, Lili; Milesi, Pascal; Jansson, Gunnar et al.

Part of Evolutionary Applications, p. 1539-1551, 2019.

DOI for Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce Download full text (pdf) of Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce

High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island

Latreille, Anne C.; Milesi, Pascal; Magalon, Hélène; Mavingui, Patrick et al.

Part of Parasites & Vectors, 2019.

DOI for High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island Download full text (pdf) of High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island

Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)

Kryvokhyzha, Dmytro; Milesi, Pascal; Duan, Tianlin; Orsucci, Marion et al.

Part of PLOS Genetics, 2019.

DOI for Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris) Download full text (pdf) of Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)

The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation

Milesi, Pascal; Assogba, Benoit S.; Atyame, Celestine M.; Pocquet, Nicolas et al.

Part of Molecular Ecology, p. 493-507, 2018.

DOI for The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation Download full text (pdf) of The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation

Towards the new normal: Genomic and transcriptomic changes in the two subgenomes of a 100,000 years old tetraploid, Capsella bursa-pastoris

Kryvokhyzha, Dmytro; Duan, Tianlin; Orsucci, Marion; Milesi, Pascal et al.

2018.

Recent introductions, ancient recolonization events and local adaptation: a first fine-scale mapping of the population genetic structure of Norway spruce across Sweden

Li, Lili; Milesi, Pascal; Chen, Jun; Baison, John et al.