Publications

Näsvall, Karin

Rates and patterns of genome evolution in Lepidoptera

2023.

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Supplementary Data File 1. Wing polyphenism in a water strider is caused by photoperiod-induced expression of the Fat/Hippo pathway

Gudmunds, Erik; Armisen, David

2023.

Highly differentiated loci resolve phylogenetic relationships in the Bean Goose complex

Ottenburghs, Jente; Honka, Johanna; Heikkinen, Marja E.; Madsen, Jesper et al.

Part of BMC ECOLOGY AND EVOLUTION, 2023.

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Assortative Mating in an Ecological Context: Effects of Mate Choice Errors and Relative Species Abundance on the Frequency and Asymmetry of Hybridization

Qvarnström, Anna; Veen, Thor; Husby, Arild; Ålund, Murielle et al.

Part of American Naturalist, p. 125-137, 2023.

DOI for Assortative Mating in an Ecological Context: Effects of Mate Choice Errors and Relative Species Abundance on the Frequency and Asymmetry of Hybridization Download full text (pdf) of Assortative Mating in an Ecological Context: Effects of Mate Choice Errors and Relative Species Abundance on the Frequency and Asymmetry of Hybridization

Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles

Immonen, Elina; Sayadi, Ahmed; Stojkovic, Biljana; Savkovic, Uros et al.

Part of Genome Biology and Evolution, 2023.

DOI for Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles Download full text (pdf) of Experimental Life History Evolution Results in Sex-specific Evolution of Gene Expression in Seed Beetles

Gudmunds, Erik

From environmental cue to phenotypic variation – a functional investigation of wing polyphenism in an emerging model species

2023.

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Stochastic nuclear organization and host-dependent allele contribution in Rhizophagus irregularis

van Creij, Jelle; Auxier, Ben; An, Jianyong; Wijfjes, Raul Y. et al.

Part of BMC Genomics, 2023.

DOI for Stochastic nuclear organization and host-dependent allele contribution in Rhizophagus irregularis Download full text (pdf) of Stochastic nuclear organization and host-dependent allele contribution in Rhizophagus irregularis

Chase, Madeline

Speciation genomics in Ficedula flycatchers

Lindahlsalen, Evolutionary Biology Center, Norbyvägen 18A, Uppsala 2023-03-24 10:00

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Larger genomes show improved buffering of adult fitness against environmental stress in seed beetles

Boman, Jesper; Arnqvist, Göran

Part of Biology Letters, 2023.

DOI for Larger genomes show improved buffering of adult fitness against environmental stress in seed beetles Download full text (pdf) of Larger genomes show improved buffering of adult fitness against environmental stress in seed beetles

High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.)

Höök, Lars; Näsvall, Karin; Vila, R.; Wiklund, C. et al.

Part of Chromosome Research, 2023.

DOI for High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.) Download full text (pdf) of High-density linkage maps and chromosome level genome assemblies unveil direction and frequency of extensive structural rearrangements in wood white butterflies (Leptidea spp.)

The swan genome and transcriptome, it is not all black and white

Karawita, Anjana C.; Cheng, Yuanyuan; Chew, Keng Yih; Challagulla, Arjun et al.

Part of Genome Biology, 2023.

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A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats

Kakhki, Niloofar Alaei; Schweizer, Manuel; Lutgen, Dave; Bowie, Rauri C. K. et al.

Part of Molecular biology and evolution, 2023.

DOI for A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats

Eine Idee mit Biss

Ågren, Arvid

Part of Merkur, p. 75-82, 2022.

Wild epigenetics: insights from epigenetic studies on natural populations

Husby, Arild

Part of Proceedings of the Royal Society of London. Biological Sciences, 2022.

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Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages

Karmin, Monika; Flores, Rodrigo; Saag, Lauri; Hudjashov, Georgi et al.

Part of Molecular biology and evolution, 2022.

DOI for Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages Download full text (pdf) of Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages

Paxilloboletus gen. nov., a new lamellate bolete genus from tropical Africa

Badou, Sylvestre A.; Furneaux, Brendan R.; De Kesel, André; Kalsoom, Faheema et al.

Part of Mycological progress, p. 243-256, 2022.

DOI for Paxilloboletus gen. nov., a new lamellate bolete genus from tropical Africa Download full text (pdf) of Paxilloboletus gen. nov., a new lamellate bolete genus from tropical Africa

Global urban environmental change drives adaptation in white clover

Santangelo, James S.; Ness, Rob W.; Cohan, Beata; Fitzpatrick, Connor R. et al.

Part of Science, 2022.

DOI for Global urban environmental change drives adaptation in white clover

Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long‐read metabarcoding

Eshghi Sahraei, Shadi; Furneaux, Brendan; Kluting, Kerri; Zakieh, Mustafa et al.

Part of Ecology and Evolution, 2022.

DOI for Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long‐read metabarcoding Download full text (pdf) of Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long‐read metabarcoding

Whole-genome resequencing of temporally stratified samples reveals substantial loss of haplotype diversity in the highly inbred Scandinavian wolf population

Viluma, Agnese; Flagstad, Oystein; Akesson, Mikael; Wikenros, Camilla et al.

Part of Genome Research, p. 449-458, 2022.

DOI for Whole-genome resequencing of temporally stratified samples reveals substantial loss of haplotype diversity in the highly inbred Scandinavian wolf population Download full text (pdf) of Whole-genome resequencing of temporally stratified samples reveals substantial loss of haplotype diversity in the highly inbred Scandinavian wolf population

A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Müller, Rebekka; Kaj, Ingemar; Mugal, Carina

Part of Genome Biology and Evolution, 2022.

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Sahraei, Shadi Eshghi

Symbiosis in Arbuscular Mycorrhizal Fungi: Unearthing genomic signatures

2022.

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Effects of environment and genotype on dispersal differ across departure, transfer and settlement in a butterfly metapopulation

DiLeo, Michelle F.; Nonaka, Etsuko; Husby, Arild; Saastamoinen, Marjo

Part of Proceedings of the Royal Society of London. Biological Sciences, 2022.

DOI for Effects of environment and genotype on dispersal differ across departure, transfer and settlement in a butterfly metapopulation Download full text (pdf) of Effects of environment and genotype on dispersal differ across departure, transfer and settlement in a butterfly metapopulation

Trade-Offs Predicted by Metabolic Network Structure Give Rise to Evolutionary Specialization and Phenotypic Diversification

Ekkers, David M.; Tusso Gomez, Sergio; Moreno-Gamez, Stefany; Rillo, Marina C. et al.

Part of Molecular biology and evolution, 2022.

DOI for Trade-Offs Predicted by Metabolic Network Structure Give Rise to Evolutionary Specialization and Phenotypic Diversification Download full text (pdf) of Trade-Offs Predicted by Metabolic Network Structure Give Rise to Evolutionary Specialization and Phenotypic Diversification

Potential for increased connectivity between differentiated wolverine populations

Lansink, G. M. J.; Kleven, O.; Ekblom, R.; Spong, G. et al.

Part of Biological Conservation, 2022.

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Structure, Evidence, and Heuristic: Evolutionary Biology, Economics, and the Philosophy of Their Relationship. Routledge Studies in the Philosophy of Science by Armin W. Schulz

Ågren, Arvid

Part of The Quarterly review of biology, p. 50-50, 2022.

DOI for Structure, Evidence, and Heuristic: Evolutionary Biology, Economics, and the Philosophy of Their Relationship. Routledge Studies in the Philosophy of Science by Armin W. Schulz

Meiosis solved the problem of gerrymandering

Ågren, Arvid; Haig, David; McCOY, Dakota E.

Part of Journal of Genetics, 2022.

DOI for Meiosis solved the problem of gerrymandering

The spore killers, fungal meiotic driver elements

Vogan, Aaron A.; Martinossi-Allibert, Ivain; Ament-Velasquez, S. Lorena; Svedberg, Jesper et al.

Part of Mycologia, p. 1-23, 2022.

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Growth rate mediates hidden developmental plasticity of female yellow dung fly reproductive morphology in response to environmental stressors

Walters, Richard J.; Berger, David; Blanckenhorn, Wolf U.; Bussiere, Luc F. et al.

Part of Evolution & Development, p. 3-15, 2022.

DOI for Growth rate mediates hidden developmental plasticity of female yellow dung fly reproductive morphology in response to environmental stressors Download full text (pdf) of Growth rate mediates hidden developmental plasticity of female yellow dung fly reproductive morphology in response to environmental stressors

Evolutionary history of sexual selection affects microRNA profiles in Drosophila sperm

Hotzy, Cosima; Fowler, Emily; Kiehl, Berrit; Francis, Roy M. et al.

Part of Evolution, p. 310-319, 2022.

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Genomic associations with poxvirus across divergent island populations in Berthelot's pipit

Sheppard, Eleanor C.; Martin, Claudia A.; Armstrong, Claire; Gonzalez-Quevedo, Catalina et al.

Part of Molecular Ecology, p. 3154-3173, 2022.

DOI for Genomic associations with poxvirus across divergent island populations in Berthelot's pipit Download full text (pdf) of Genomic associations with poxvirus across divergent island populations in Berthelot's pipit

Global diversity and distribution of mushroom-inhabiting bacteria

Gohar, Daniyal; Poldmaa, Kadri; Tedersoo, Leho; Aslani, Farzad et al.

Part of Environmental Microbiology Reports, p. 254-264, 2022.

DOI for Global diversity and distribution of mushroom-inhabiting bacteria

On the Mechanistic Basis of Killer Meiotic Drive in Fungi

Saupe, Sven J.; Johannesson, Hanna

Part of Annual Review of Microbiology, p. 305-323, 2022.

DOI for On the Mechanistic Basis of Killer Meiotic Drive in Fungi

Kaufmann, Philipp

The evolution of sexual dimorphism and its genetic underpinnings

2022.

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Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii

Kuehn, Emily; Clausen, David S.; Null, Ryan W.; Metzger, Bria M. et al.

Part of Journal of Experimental Zoology Part B, p. 225-240, 2022.

DOI for Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii

Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals

Segami, Carolina; Semon, Marie; Cunha, Catarina; Bergin, Claudia et al.

2022.

DOI for Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals Download full text (pdf) of Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals

Kungl. Vetenskaps-Societeten i 1800-talets Uppsala

Ellegren, Hans

Acta Universitatis Upsaliensis, 2022.

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Kungl. Vetenskaps-Societetens protokoll 1880–1901

Ellegren, Hans

2022.

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Transcriptome-based phylogeny of the semi-aquatic bugs (Hemiptera Heteroptera: Gerromorpha) reveals patterns of lineage expansion in a series of new adaptive zones

Armisen, David; Viala, Severine; Silva Cordeiro, Isabelle da Rocha; Johan Crumiere, Antonin Jean et al.

Part of Molecular biology and evolution, 2022.

DOI for Transcriptome-based phylogeny of the semi-aquatic bugs (Hemiptera Heteroptera: Gerromorpha) reveals patterns of lineage expansion in a series of new adaptive zones Download full text (pdf) of Transcriptome-based phylogeny of the semi-aquatic bugs (Hemiptera Heteroptera: Gerromorpha) reveals patterns of lineage expansion in a series of new adaptive zones

Structure, Evidence, and Heuristic: Evolutionary Biology, Economics, and the Philosophy of Their Relationship. Routledge Studies in the Philosophy of Science by Armin W. Schulz. New York: Routledge (Taylor & Francis Group). $160.00. xi + 228 p.; ill.; index. ISBN: 978-0-367-46590-2 (hc); 978-1-003-03024-9 (eb). 2020

Ågren, J. Arvid

Part of The Quarterly review of biology, p. 50-50, 2022.

DOI for Structure, Evidence, and Heuristic: Evolutionary Biology, Economics, and the Philosophy of Their Relationship. Routledge Studies in the Philosophy of Science by Armin W. Schulz. New York: Routledge (Taylor & Francis Group). $160.00. xi + 228 p.; ill.; index. ISBN: 978-0-367-46590-2 (hc); 978-1-003-03024-9 (eb). 2020

Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly

Shipilina, Daria; Näsvall, Karin; Höök, Lars; Vila, Roger et al.

Part of Genomics, 2022.

DOI for Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly Download full text (pdf) of Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly

Concerted evolution of metabolic rate, economics of mating, ecology, and pace of life across seed beetles

Arnqvist, Göran; Rönn, Johanna; Watson, Christopher; Goenaga, Julieta et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022.

DOI for Concerted evolution of metabolic rate, economics of mating, ecology, and pace of life across seed beetles Download full text (pdf) of Concerted evolution of metabolic rate, economics of mating, ecology, and pace of life across seed beetles

Infection by a helminth parasite is associated with changes in DNA methylation in the house sparrow

Lundregan, Sarah L.; Mäkinen, Hannu; Buer, Amberly; Holand, Håkon et al.

Part of Ecology and Evolution, 2022.

DOI for Infection by a helminth parasite is associated with changes in DNA methylation in the house sparrow Download full text (pdf) of Infection by a helminth parasite is associated with changes in DNA methylation in the house sparrow

Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi

Sheikh, Sanea; Kalsoom, Faheema; Bahram, Mohammad; Ryberg, Martin

Part of Scientific Reports, 2022.

DOI for Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi

Genetic conflicts and the case for licensed anthropomorphizing

Ågren, J. Arvid; Patten, Manus M.

Part of Behavioral Ecology and Sociobiology, 2022.

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Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum

Eshghi Sahraei, Shadi; Sanchez-Garcia, Marisol; Montoliu-Nerin, Merce; Manyara, David et al.

Part of Mycorrhiza, p. 361-371, 2022.

DOI for Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum Download full text (pdf) of Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum

Photoperiod controls wing polyphenism in a water strider independently of insulin receptor signalling

Gudmunds, Erik; Narayanan, Shrinath; Lachivier, Elise; Duchemin, Marion et al.

Part of Proceedings of the Royal Society of London. Biological Sciences, 2022.

DOI for Photoperiod controls wing polyphenism in a water strider independently of insulin receptor signalling Download full text (pdf) of Photoperiod controls wing polyphenism in a water strider independently of insulin receptor signalling

Functional genomic tools for emerging model species

Gudmunds, Erik; Wheat, Christopher W.; Khila, Abderrahman; Husby, Arild

Part of Trends in Ecology & Evolution, p. 1104-1115, 2022.

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Global patterns in endemicity and vulnerability of soil fungi

Tedersoo, Leho; Mikryukov, Vladimir; Zizka, Alexander; Bahram, Mohammad et al.

Part of Global Change Biology, p. 6696-6710, 2022.

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Mating strategy predicts gene presence/absence patterns in a genus of simultaneously hermaphroditic flatworms

Wiberg, R. Axel W.; Viktorin, Gudrun; Scharer, Lukas

Part of Evolution, p. 3054-3066, 2022.

DOI for Mating strategy predicts gene presence/absence patterns in a genus of simultaneously hermaphroditic flatworms Download full text (pdf) of Mating strategy predicts gene presence/absence patterns in a genus of simultaneously hermaphroditic flatworms

Editorial: Cytogenomics: Structural Organization and Evolution of Genomes

Utsunomia, Ricardo; Vaio, Magdalena; Ruiz-Ruano, Francisco J.

Part of Frontiers in Genetics, 2022.

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