Publications

Here is a list of our publications

  • Lindner, Melanie; Verhagen, Irene; Viitaniemi, Heidi M.; Laine, Veronika N. et al.

    Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

    Part of BMC Genomics, 2021.

    Open access
  • Ellegren, Hans

    Kungl. Vetenskaps-Societetens protokoll 1803–1879

    Acta Universitatis Upsaliensis, 2021.

    Open access
  • Dussex, Nicolas; Kutschera, Verena E.; Wiberg, R. Axel W.; Parker, Darren J. et al.

    A genome-wide investigation of adaptive signatures in protein-coding genes related to tool behaviour in New Caledonian and Hawaiian crows

    Part of Molecular Ecology, p. 973-986, 2021.

  • Näsvall, Karin; Wiklund, Christer; Mrazek, Veronika; Kunstner, Axel et al.

    Host plant diet affects growth and induces altered gene expression and microbiome composition in the wood white (Leptidea sinapis) butterfly

    Part of Molecular Ecology, p. 499-516, 2021.

    Open access
  • Mahadevaraju, Sharvani; Fear, Justin M.; Akeju, Miriam; Galletta, Brian J. et al.

    Dynamic sex chromosome expression in Drosophila male germ cells

    Part of Nature Communications, 2021.

    Open access
  • Kaasalainen, Ulla; Tuovinen, Veera; Kirika, Paul M.; Mollel, Neduvoto P. et al.

    Diversity of Leptogium (Collemataceae, Ascomycota) in East African Montane Ecosystems

    Part of Microorganisms, 2021.

    Open access
  • Blank, Malou; Sjogren, Karl-Goran; Knipper, Corina; Frei, Karin M. et al.

    Mobility patterns in inland southwestern Sweden during the Neolithic and Early Bronze Age

    Part of Archaeological and Anthropological Sciences, 2021.

    Open access
  • McGurk, Michael P.; Dion-Cote, Anne-Marie; Barbash, Daniel A.

    Rapid evolution at the Drosophila telomere: transposable element dynamics at an intrinsically unstable locus

    Part of Genetics, 2021.

  • Silva, Willian T. A. F.; Otto, Sarah P.; Immler, Simone

    Evolution of plasticity in production and transgenerational inheritance of small RNAs under dynamic environmental conditions

    Part of PLoS Genetics, 2021.

    Open access
  • Bagchi, Basabi; Corbel, Quentin; Khan, Imroze; Payne, Ellen et al.

    Sexual conflict drives micro- and macroevolution of sexual dimorphism in immunity

    Part of BMC Biology, 2021.

    Open access
  • Kaasalainen, Ulla; Tuovinen, Veera; Mwachala, Geoffrey; Pellikka, Petri et al.

    Complex interaction networks among cyanolichens of a tropical biodiversity hotspot

    Part of Frontiers in Microbiology, 2021.

    Open access
  • Boman, Jesper; Mugal, Carina F.; Backström, Niclas

    The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes

    Part of Genome Biology and Evolution, 2021.

    Open access
  • Hartmann, Fanny E.; Ament-Velásquez, Sandra Lorena; Vogan, Aaron A.; Gautier, Valerie et al.

    Size Variation of the Nonrecombining Region on the Mating-Type Chromosomes in the Fungal Podospora anserina Species Complex

    Part of Molecular biology and evolution, p. 2475-2492, 2021.

    Open access
  • Queckboerner, Suzanna; von Grothusen, Carolina; Boggavarapu, Nageswara Rao; Francis, Roy M. et al.

    Stromal Heterogeneity in the Human Proliferative Endometrium-A Single-Cell RNA Sequencing Study

    Part of Journal of Personalized Medicine, 2021.

    Open access
  • Tusso, Sergio; Nieuwenhuis, Bart P. S.; Weissensteiner, Bernadette; Immler, Simone et al.

    Experimental evolution of adaptive divergence under varying degrees of gene flow

    Part of Nature Ecology & Evolution, 2021.

  • Pereira, Ricardo J.; Ruiz-Ruano, Francisco J.; Thomas, Callum Je; Perez-Ruiz, Mar et al.

    Mind the numt: Finding informative mitochondrial markers in a giant grasshopper genome

    Part of Journal of Zoological Systematics and Evolutionary Research, p. 635-645, 2021.

    Open access
  • Smeds, Linnea; Aspi, Jouni; Berglund, Jonas; Kojola, Ilpo et al.

    Whole-genome analyses provide no evidence for dog introgression in Fennoscandian wolf populations

    Part of Evolutionary Applications, p. 721-734, 2021.

    Open access
  • Peona, Valentina; Blom, Mozes P. K.; Xu, Luohao; Burri, Reto et al.

    Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise

    Part of Molecular Ecology Resources, p. 263-286, 2021.

    Open access
  • Nadachowska-Brzyska, Krystyna; Dutoit, Ludovic; Smeds, Linnea; Kardos, Martin et al.

    Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis)

    Part of Molecular Ecology, p. 3965-3973, 2021.

    Open access
  • Lindström, Åke; Alerstam, Thomas; Andersson, Arne; Backman, Johan et al.

    Extreme altitude changes between night and day during marathon flights of great snipes

    Part of Current Biology, p. 3433-+, 2021.

    Open access
  • Lindner, Melanie; Laine, Veronika N.; Verhagen, Irene; Viitaniemi, Heidi M. et al.

    Rapid changes in DNA methylation associated with the initiation of reproduction in a small songbird

    Part of Molecular Ecology, p. 3645-3659, 2021.

    Open access
  • Furneaux, Brendan R.; Bahram, Mohammad; Rosling, Anna; Yorou, Nourou S. et al.

    Long- and short-read metabarcoding technologies reveal similar spatiotemporal structures in fungal communities

    Part of Molecular Ecology Resources, p. 1833-1849, 2021.

    Open access
  • Robert, Alois; Peona, Valentina; Ottenburghs, Jente

    Digest: Population genomics reveals convergence toward melanism in different island populations

    Part of Evolution, p. 1582-1584, 2021.

  • Svensson, Emma; Günther, Torsten; Hoischen, Alexander; Hervella, Montserrat et al.

    Genome of Pesxtera Muierii skull shows high diversity and low mutational load in pre-glacial Europe

    Part of Current Biology, p. 2973-U21, 2021.

    Open access
  • Chen, Junfeng; Bi, Huijuan; Pettersson, Mats; Sato, Daiki et al.

    Functional differences between TSHR alleles associate with variation in spawning season in Atlantic herring

    Part of Communications Biology, 2021.

    Open access
  • Tuovinen, Veera; Millanes, Ana Maria; Freire-Rallo, Sandra; Rosling, Anna et al.

    Tremella macrobasidiata and Tremella variae have abundant and widespread yeast stages in Lecanora lichens

    Part of Environmental Microbiology, p. 2484-2498, 2021.

    Open access
  • Cheeke, Tanya E.; Phillips, Richard P.; Kuhn, Alexander; Rosling, Anna et al.

    Variation in hyphal production rather than turnover regulates standing fungal biomass in temperate hardwood forests

    Part of Ecology, 2021.

    Open access
  • Hiltunen, Markus; Ament-Velásquez, Sandra Lorena; Johannesson, Hanna

    The assembled and annotated genome of the fairy-ring fungus Marasmius oreades

    Part of Genome Biology and Evolution, 2021.

    Open access
  • Dufresnes, Christophe; Brelsford, Alan; Jeffries, Daniel L.; Mazepa, Glib et al.

    Mass of genes rather than master genes underlie the genomic architecture of amphibian speciation

    Part of Proceedings of the National Academy of Sciences of the United States of America, 2021.

  • Kochanova, Elena; Nair, Abhilash; Sukhikh, Natalia; Väinölä, Risto et al.

    Patterns of Cryptic Diversity and Phylogeography in Four Freshwater Copepod Crustaceans in European Lakes

    Part of Diversity, 2021.

    Open access
  • Lankheet, Imke; Vicente, Mário; Barbieri, Chiara; Schlebusch, Carina

    The performance of common SNP arrays in assigning African mitochondrial haplogroups

    Part of BMC GENOMIC DATA, 2021.

    Open access
  • Warmuth, Vera; Burgess, Malcolm D.; Laaksonen, Toni; Manica, Andrea et al.

    Major population splits coincide with episodes of rapid climate change in a forest-dependent bird

    Part of Proceedings of the Royal Society of London. Biological Sciences, 2021.

    Open access
  • Kaufmann, Philipp; Wolak, Matthew E; Husby, Arild; Immonen, Elina

    Rapid evolution of sexual size dimorphism facilitated by Y-linked genetic variance

    Part of Nature Ecology & Evolution, 2021.

  • Mugal, Carina; Kutschera, Verena E.; Botero-Castro, Fidel; Wolf, Jochen B. W. et al.

    Polymorphism Data Assist Estimation of the Nonsynonymous over Synonymous Fixation Rate Ratio omega for Closely Related Species

    Part of Molecular biology and evolution, p. 260-279, 2020.

    Open access
  • Kutschera, Verena E.; Poelstra, Jelmer W.; Botero-Castro, Fidel; Dussex, Nicolas et al.

    Purifying Selection in Corvids Is Less Efficient on Islands

    Part of Molecular biology and evolution, p. 469-474, 2020.

    Open access
  • Kaufmann, Philipp; Schärer, Lukas

    Is the initiation of selfing linked to a hermaphrodite's female or male reproductive function?

    Part of Behavioral Ecology and Sociobiology, 2020.

    Open access
  • Finlay, Roger D.; Mahmood, Shahid; Rosenstock, Nicholas; Bolou-Bi, Emile B. et al.

    Reviews and syntheses: Biological weathering and its consequences at different spatial levels - from nanoscale to global scale

    Part of Biogeosciences, p. 1507-1533, 2020.

    Open access
  • Ottenburghs, Jente

    Digest: Exploring genomic islands of differentiation on the Z chromosome of hummingbirds

    Part of Evolution, p. 793-794, 2020.

  • Husby, Arild; Modinos, Gemma

    Support early-career researchers for post-pandemic prospects

    Part of Nature, 2020.

  • Chen, Hwei-yen; Jolly, Cecile; Bublys, Kasparas; Marcu, Daniel et al.

    Trade-off between somatic and germline repair in a vertebrate supports the expensive germ line hypothesis

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 8973-8979, 2020.

    Open access
  • Knief, Ulrich; Bossu, Christen M.; Wolf, Jochen B. W.

    Extra-pair paternity as a strategy to reduce the costs of heterospecific reproduction?: Insights from the crow hybrid zone

    Part of Journal of Evolutionary Biology, p. 727-733, 2020.

    Open access
  • Palacios-Gimenez, Octavio M.; Milani, Diogo; Song, Hojun; Mart, Dardo A. et al.

    Eight Million Years of Satellite DNA Evolution in Grasshoppers of the Genus Schistocerca Illuminate the Ins and Outs of the Library Hypothesis

    Part of Genome Biology and Evolution, p. 88-102, 2020.

    Open access
  • Weissensteiner, Matthias H.; Bunikis, Ignas; Catalan, Ana; Francoijs, Kees-Jan et al.

    Discovery and population genomics of structural variation in a songbird genus

    Part of Nature Communications, 2020.

    Open access
  • Niskanen, Alina K.; Billing, Anna M.; Holand, Håkon; Hagen, Ingerid J. et al.

    Consistent scaling of inbreeding depression in space and time in a house sparrow metapopulation

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 14584-14592, 2020.

  • Hambrecht, George; Anderung, Cecilia; Brewington, Seth; Dugmore, Andrew et al.

    Archaeological sites as Distributed Long-term Observing Networks of the Past (DONOP)

    Part of Quaternary International, p. 218-226, 2020.

  • Vicente, Mário; Schlebusch, Carina

    African population history: an ancient DNA perspective.

    Part of Current Opinion in Genetics and Development, p. 8-15, 2020.

    Open access
  • Ottenburghs, Jente; Honka, Johanna; Musken, Gerard J. D. M.; Ellegren, Hans

    Recent introgression between Taiga Bean Goose and Tundra Bean Goose results in a largely homogeneous landscape of genetic differentiation

    Part of Heredity, p. 73-84, 2020.

    Open access
  • Rogell, Bjorn; Dowling, Damian K.; Husby, Arild

    Controlling for body size leads to inferential biases in the biological sciences

    Part of EVOLUTION LETTERS, p. 73-82, 2020.

    Open access
  • Ferretti, Ana B. S. M.; Milani, Diogo; Palacios Gimenez, Octavio Manuel; Ruiz-Ruano, Francisco J. et al.

    High dynamism for neo-sex chromosomes: satellite DNAs reveal complex evolution in a grasshopper

    Part of Heredity, p. 124-137, 2020.

  • Peart, Claire R.; Tusso, Sergio; Pophaly, Saurabh D.; Botero-Castro, Fidel et al.

    Determinants of genetic variation across eco-evolutionary scales in pinnipeds

    Part of Nature Ecology & Evolution, p. 1095-1104, 2020.