Here is a list of our publications

  • Schweizer, Manuel; Warmuth, Vera; Kakhki, Niloofar Alaei; Aliabadian, Mansour et al.

    Parallel plumage colour evolution and introgressive hybridization in wheatears

    Part of Journal of Evolutionary Biology, p. 100-110, 2019.

  • Gunnarsson, Karl; Ekblom, Robert

    Review of the diet specialisation of the Blue-cheeked bee-eater (Merops persicus)

    Part of Journal of Ornithology, p. 275-279, 2019.

  • Bayram, Helen L.; Sayadi, Ahmed; Immonen, Elina; Arnqvist, Göran

    Identification of novel ejaculate proteins in a seed beetle and division of labour across male accessory reproductive glands

    Part of Insect biochemistry and molecular biology, p. 50 50-57 57, 2019.

  • Weissensteiner, Matthias H.

    Evolutionary genomics in Corvids: – From single nucleotides to structural variants

    Open access
  • Wu, Chi-Chih; Klaesson, Axel; Buskas, Julia; Ranefall, Petter et al.

    In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation

    Part of Journal of Experimental Biology, 2019.

  • Warmuth, Vera; Ellegren, Hans

    Genotype-free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data

    Part of Molecular Ecology Resources, p. 586-596, 2019.

  • Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

    GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

    Part of Genome Biology, 2019.

    Open access
  • Knief, Ulrich; Bossu, Christen M.; Saino, Nicola; Hansson, Bengt et al.

    Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone

    Part of Nature Ecology & Evolution, p. 570-576, 2019.

  • Ramnarine, Timothy J. S.; Glaser-Schmitt, Amanda; Catalan, Ana; Parsch, John

    Population Genetic and Functional Analysis of a cis-Regulatory Polymorphism in the Drosophila melanogaster Metallothionein A gene

    Part of Genes, 2019.

    Open access
  • Alavioon, Ghazal; Garcia, Andrea Cabrera; LeChatelier, Magali; Maklakov, Alex A. et al.

    Selection for longer lived sperm within ejaculate reduces reproductive ageing in offspring

    Part of EVOLUTION LETTERS, p. 198 198-206 206, 2019.

    Open access
  • Richert, Inga; Yager, Patricia L.; Dinasquet, Julie; Logares, Ramiro et al.

    Summer comes to the Southern Ocean: How phytoplankton shape bacterioplankton communities far into the deep dark sea

    Part of Ecosphere, 2019.

    Open access
  • Suh, Alexander

    Genome Size Evolution: Small Transposons with Large Consequences

    Part of Current Biology, p. R241-R243, 2019.

  • Rettelbach, Agnes; Nater, Alexander; Ellegren, Hans

    How Linked Selection Shapes the Diversity Landscape in Ficedula Flycatchers

    Part of Genetics, p. 277-285, 2019.

    Open access
  • Bolívar, Paulina

    Rates and patterns of molecular evolution in avian genomes

    Open access
  • Boman, Jesper; Frankl-Vilches, Carolina; dos Santos, Michelly da Silva; de Oliveira, Edivaldo H. C. et al.

    The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch

    Part of Genes, 2019.

    Open access
  • Bernhardsson, Carolina; Vidalis, Amaryllis; Wang, Xi; Scofield, Douglas et al.

    An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)

    Part of G3, p. 1623-1632, 2019.

  • Xu, Luohao; Auer, Gabriel; Peona, Valentina; Suh, Alexander et al.

    Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds

    Part of Nature Ecology & Evolution, p. 834-844, 2019.

  • Ferretti, Ana B. S. M.; Ruiz-Ruano, Francisco J.; Milani, Diogo; Loreto, Vilma et al.

    How dynamic could be the 45S rDNA cistron?: An intriguing variability in a grasshopper species revealed by integration of chromosomal and genomic data

    Part of Chromosoma, p. 165-175, 2019.

  • Nadachowska-Brzyska, Krystyna; Burri, Reto; Ellegren, Hans

    Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers

    Part of Molecular Ecology, p. 2290-2304, 2019.

    Open access
  • Grosser, Stefanie; Sauer, Jan; Paijmans, Anneke J.; Caspers, Barbara A. et al.

    Fur seal microbiota are shaped by the social and physical environment, show mother-offspring similarities and are associated with host genetic quality

    Part of Molecular Ecology, p. 2406-2422, 2019.

  • Smeds, Linnea; Kojola, Ilpo; Ellegren, Hans

    The evolutionary history of grey wolf Y chromosomes

    Part of Molecular Ecology, p. 2173-2191, 2019.

    Open access
  • Hooper, Rebecca; Brealey, Jaelle C.; van der Valk, Tom; Alberdi, Antton et al.

    Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

    Part of Molecular Ecology, p. 484-502, 2019.

    Open access
  • Anderson, Jennifer L; Nieuwenhuis, Bart P. S.; Johannesson, Hanna

    Asexual reproduction and growth rate: independent and plastic lifehistory traits in Neurospora crassa

    Part of The ISME Journal, p. 780-788, 2019.

    Open access
  • Ottenburghs, Jente

    Multispecies hybridization in birds

    Part of Avian Research, 2019.

    Open access
  • Silva, Willian T. A. F.; Sáez-Espinosa, Paula; Torrijo-Boix, Stéphanie; Romero, Alejandro et al.

    The effects of male social environment on sperm phenotype and genome integrity

    Part of Journal of Evolutionary Biology, p. 535-544, 2019.

    Open access
  • Prost, Stefan; Armstrong, Ellie E.; Nylander, Johan; Thomas, Gregg W. C. et al.

    Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise

    Part of GigaScience, 2019.

    Open access
  • Wang, Mi

    Gene regulatory evolution in flycatchers: statistical approaches for the analysis of allele-specific expression

    Open access
  • Ellegren, Hans

    Hvad nytt och nyttigt: Tillkomsten av Sveriges första lärda sällskap: Kungl. Vetenskaps-Societeten i Uppsala

    Acta Universitatis Upsaliensis, 2019.

    Open access
  • Weber, Claudia C.; Whelan, Simon

    Physicochemical Amino Acid Properties Better Describe Substitution Rates in Large Populations

    Part of Molecular biology and evolution, p. 679-690, 2019.

    Open access
  • Viitaniemi, Heidi M.; Verhagen, Irene; Visser, Marcel E.; Honkela, Antti et al.

    Seasonal Variation in Genome-Wide DNA Methylation Patterns and the Onset of Seasonal Timing of Reproduction in Great Tits

    Part of Genome Biology and Evolution, p. 970-983, 2019.

    Open access
  • Xu, Wenbo

    Cut-and-paste transposable elements in the arbuscular mycorrhizal fungi Claroideoglomus claroideum


    Open access
  • Cheng, George

    Uncovering the genetic organisation of Claroideoglomus candidum


    Open access
  • Mäkinen, Hannu; Viitaniemi, Heidi M.; Visser, Marcel E.; Verhagen, Irene et al.

    Temporally replicated DNA methylation patterns in great tit using reduced representation bisulfite sequencing

    Part of Scientific Data, 2019.

    Open access
  • Walters, Richard J.; Berger, David

    Implications of existing local (mal)adaptations for ecological forecasting under environmental change

    Part of Evolutionary Applications, p. 1487-1502, 2019.

    Open access
  • Ottenburghs, Jente

    Digest: White-eye birds provide possible answer to the paradox of the great speciator

    Part of Evolution, p. 1681-1682, 2019.

  • Kawakami, Takeshi; Wallberg, Andreas; Olsson, Anna; Wintermantel, Dimitry et al.

    Substantial Heritable Variation in Recombination Rate on Multiple Scales in Honeybees and Bumblebees

    Part of Genetics, p. 1101-1119, 2019.

  • Tusso Gomez, Sergio Ivan

    Adaptive divergence in fission yeast: From experimental evolution to evolutionary genomics

    Open access
  • Tao, Yu-Tian; Suo, Fang; Tusso, Sergio; Wang, Yan-Kai et al.

    Intraspecific diversity of fission yeast mitochondrial genomes

    Part of Genome Biology and Evolution, p. 2312-2329, 2019.

  • Schweizer, Manuel; Warmuth, Vera M.; Kakhki, Niloofar Alaei; Aliabadian, Mansour et al.

    Genome-wide evidence supports mitochondrial relationships and pervasive parallel phenotypic evolution in open-habitat chats

    Part of Molecular Phylogenetics and Evolution, 2019.

  • Lele, Abhimanyu; Ottenburghs, Jente

    A single genetic origin and a role for bone development pathways in repeated losses of flight in steamer ducks: Digest

    Part of Evolution, p. 2030-2032, 2019.

  • Rosenstock, Nicholas P.; van Hees, Patrick A. W.; Fransson, Petra M. A.; Finlay, Roger D. et al.

    Biological enhancement of mineral weathering by Pinus sylvestris seedlings - effects of plants, ectomycorrhizal fungi, and elevated CO2

    Part of Biogeosciences, p. 3637-3649, 2019.

    Open access
  • Talla, Venkat; Johansson, Anna; Dinca, Vlad; Vila, Roger et al.

    Lack of gene flow: Narrow and dispersed differentiation islands in a triplet of Leptidea butterfly species

    Part of Molecular Ecology, p. 3756-3770, 2019.

  • Baison, John; Vidalis, Amaryllis; Zhou, Linghua; Chen, Zhi-Qiang et al.

    Genome-wide association study identified novel candidate loci affecting wood formation in Norway spruce

    Part of The Plant Journal, p. 83-100, 2019.

    Open access
  • Höök, Lars; Leal, Luis; Talla, Venkat; Backström, Niclas

    Multilayered Tuning of Dosage Compensation and Z-Chromosome Masculinization in the Wood White (Leptidea sinapis) Butterfly

    Part of Genome Biology and Evolution, p. 2633-2652, 2019.

  • Catalan, Ana; Briscoe, Adriana D.; Hohna, Sebastian

    Drift and Directional Selection Are the Evolutionary Forces Driving Gene Expression Divergence in Eye and Brain Tissue of Heliconius Butterflies

    Part of Genetics, p. 581-594, 2019.

    Open access
  • Tusso, Sergio; Nieuwenhuis, Bart P. S.; Sedlazeck, Fritz J.; Davey, John W. et al.

    Ancestral admixture is the main determinant of global biodiversity in fission yeast

    Part of Molecular biology and evolution, p. 1975-1989, 2019.

    Open access
  • Dufresnes, Christophe; Mazepa, Glib; Jablonski, Daniel; Oliveira, Ricardo Caliari et al.

    Fifteen shades of green: The evolution of Bufotes toads revisited

    Part of Molecular Phylogenetics and Evolution, 2019.

  • Holtmann, Benedikt; Buskas, Julia; Steele, Matthew; Solokovskis, Kristaps et al.

    Dominance relationships and coalitionary aggression against conspecifics in female carrion crows

    Part of Scientific Reports, 2019.

    Open access
  • Vilhelmsson Sinclair, Bella

    Characterization of the Recombination Landscape in Red-Breasted and Taiga Flycatchers


    Open access
  • Mesilaakso, Lauri

    Bioinformatic approaches for detecting homologous genes in the genomes of non-model organisms: A case study of wing development genes in insect genomes


    Open access