Publications

Näsvall, Karin

Rates and patterns of genome evolution in Lepidoptera

Zootis-salen, EBC, Norbyvägen 14, 752 36 Uppsala 2023-02-10 10:15

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Supplementary Data File 1. Wing polyphenism in a water strider is caused by photoperiod-induced expression of the Fat/Hippo pathway

Gudmunds, Erik; Armisen, David

2023.

Eine Idee mit Biss

Ågren, Arvid

Part of Merkur, p. 75-82, 2022.

Wild epigenetics: insights from epigenetic studies on natural populations

Husby, Arild

Part of Proceedings of the Royal Society of London. Biological Sciences, 2022.

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Occasional paternal inheritance of the germline-restricted chromosome in songbirds

Pei, Yifan; Forstmeier, Wolfgang; Ruiz-Ruano, Francisco J.; Mueller, Jakob C. et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022.

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Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages

Karmin, Monika; Flores, Rodrigo; Saag, Lauri; Hudjashov, Georgi et al.

Part of Molecular biology and evolution, 2022.

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Paxilloboletus gen. nov., a new lamellate bolete genus from tropical Africa

Badou, Sylvestre A.; Furneaux, Brendan R.; De Kesel, André; Kalsoom, Faheema et al.

Part of Mycological progress, p. 243-256, 2022.

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Global urban environmental change drives adaptation in white clover

Santangelo, James S.; Ness, Rob W.; Cohan, Beata; Fitzpatrick, Connor R. et al.

Part of Science, 2022.

DOI for Global urban environmental change drives adaptation in white clover

Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long‐read metabarcoding

Eshghi Sahraei, Shadi; Furneaux, Brendan; Kluting, Kerri; Zakieh, Mustafa et al.

Part of Ecology and Evolution, 2022.

DOI for Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long‐read metabarcoding Download full text (pdf) of Effects of operational taxonomic unit inference methods on soil microeukaryote community analysis using long‐read metabarcoding

Whole-genome resequencing of temporally stratified samples reveals substantial loss of haplotype diversity in the highly inbred Scandinavian wolf population

Viluma, Agnese; Flagstad, Oystein; Akesson, Mikael; Wikenros, Camilla et al.

Part of Genome Research, p. 449-458, 2022.

DOI for Whole-genome resequencing of temporally stratified samples reveals substantial loss of haplotype diversity in the highly inbred Scandinavian wolf population Download full text (pdf) of Whole-genome resequencing of temporally stratified samples reveals substantial loss of haplotype diversity in the highly inbred Scandinavian wolf population

A Nearly Neutral Model of Molecular Signatures of Natural Selection after Change in Population Size

Müller, Rebekka; Kaj, Ingemar; Mugal, Carina

Part of Genome Biology and Evolution, 2022.

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Sahraei, Shadi Eshghi

Symbiosis in Arbuscular Mycorrhizal Fungi: Unearthing genomic signatures

2022.

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Effects of environment and genotype on dispersal differ across departure, transfer and settlement in a butterfly metapopulation

DiLeo, Michelle F.; Nonaka, Etsuko; Husby, Arild; Saastamoinen, Marjo

Part of Proceedings of the Royal Society of London. Biological Sciences, 2022.

DOI for Effects of environment and genotype on dispersal differ across departure, transfer and settlement in a butterfly metapopulation Download full text (pdf) of Effects of environment and genotype on dispersal differ across departure, transfer and settlement in a butterfly metapopulation

Trade-Offs Predicted by Metabolic Network Structure Give Rise to Evolutionary Specialization and Phenotypic Diversification

Ekkers, David M.; Tusso Gomez, Sergio; Moreno-Gamez, Stefany; Rillo, Marina C. et al.

Part of Molecular biology and evolution, 2022.

DOI for Trade-Offs Predicted by Metabolic Network Structure Give Rise to Evolutionary Specialization and Phenotypic Diversification Download full text (pdf) of Trade-Offs Predicted by Metabolic Network Structure Give Rise to Evolutionary Specialization and Phenotypic Diversification

Potential for increased connectivity between differentiated wolverine populations

Lansink, G. M. J.; Kleven, O.; Ekblom, R.; Spong, G. et al.

Part of Biological Conservation, 2022.

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Structure, Evidence, and Heuristic: Evolutionary Biology, Economics, and the Philosophy of Their Relationship. Routledge Studies in the Philosophy of Science by Armin W. Schulz

Ågren, Arvid

Part of The Quarterly review of biology, p. 50-50, 2022.

DOI for Structure, Evidence, and Heuristic: Evolutionary Biology, Economics, and the Philosophy of Their Relationship. Routledge Studies in the Philosophy of Science by Armin W. Schulz

Meiosis solved the problem of gerrymandering

Ågren, Arvid; Haig, David; McCOY, Dakota E.

Part of Journal of Genetics, 2022.

DOI for Meiosis solved the problem of gerrymandering

The spore killers, fungal meiotic driver elements

Vogan, Aaron A.; Martinossi-Allibert, Ivain; Ament-Velasquez, S. Lorena; Svedberg, Jesper et al.

Part of Mycologia, p. 1-23, 2022.

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Growth rate mediates hidden developmental plasticity of female yellow dung fly reproductive morphology in response to environmental stressors

Walters, Richard J.; Berger, David; Blanckenhorn, Wolf U.; Bussiere, Luc F. et al.

Part of Evolution & Development, p. 3-15, 2022.

DOI for Growth rate mediates hidden developmental plasticity of female yellow dung fly reproductive morphology in response to environmental stressors Download full text (pdf) of Growth rate mediates hidden developmental plasticity of female yellow dung fly reproductive morphology in response to environmental stressors

Evolutionary history of sexual selection affects microRNA profiles in Drosophila sperm

Hotzy, Cosima; Fowler, Emily; Kiehl, Berrit; Francis, Roy M. et al.

Part of Evolution, p. 310-319, 2022.

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Genomic associations with poxvirus across divergent island populations in Berthelot's pipit

Sheppard, Eleanor C.; Martin, Claudia A.; Armstrong, Claire; Gonzalez-Quevedo, Catalina et al.

Part of Molecular Ecology, p. 3154-3173, 2022.

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Editorial: Cytogenomics: Structural Organization and Evolution of Genomes

Utsunomia, Ricardo; Vaio, Magdalena; Ruiz-Ruano, Francisco J.

Part of Frontiers in Genetics, 2022.

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Global diversity and distribution of mushroom-inhabiting bacteria

Gohar, Daniyal; Poldmaa, Kadri; Tedersoo, Leho; Aslani, Farzad et al.

Part of Environmental Microbiology Reports, p. 254-264, 2022.

DOI for Global diversity and distribution of mushroom-inhabiting bacteria

On the Mechanistic Basis of Killer Meiotic Drive in Fungi

Saupe, Sven J.; Johannesson, Hanna

Part of Annual Review of Microbiology, p. 305-323, 2022.

DOI for On the Mechanistic Basis of Killer Meiotic Drive in Fungi

Kaufmann, Philipp

The evolution of sexual dimorphism and its genetic underpinnings

2022.

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Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii

Kuehn, Emily; Clausen, David S.; Null, Ryan W.; Metzger, Bria M. et al.

Part of Journal of Experimental Zoology Part B, p. 225-240, 2022.

DOI for Segment number threshold determines juvenile onset of germline cluster expansion in Platynereis dumerilii

Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals

Segami, Carolina; Semon, Marie; Cunha, Catarina; Bergin, Claudia et al.

2022.

DOI for Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals Download full text (pdf) of Single-Cell Transcriptomics reveals relaxed evolutionary constraint of spermatogenesis in two passerine birds as compared to mammals

Kungl. Vetenskaps-Societeten i 1800-talets Uppsala

Ellegren, Hans

Acta Universitatis Upsaliensis, 2022.

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Kungl. Vetenskaps-Societetens protokoll 1880–1901

Ellegren, Hans

2022.

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Transcriptome-based phylogeny of the semi-aquatic bugs (Hemiptera Heteroptera: Gerromorpha) reveals patterns of lineage expansion in a series of new adaptive zones

Armisen, David; Viala, Severine; Silva Cordeiro, Isabelle da Rocha; Johan Crumiere, Antonin Jean et al.

Part of Molecular biology and evolution, 2022.

DOI for Transcriptome-based phylogeny of the semi-aquatic bugs (Hemiptera Heteroptera: Gerromorpha) reveals patterns of lineage expansion in a series of new adaptive zones Download full text (pdf) of Transcriptome-based phylogeny of the semi-aquatic bugs (Hemiptera Heteroptera: Gerromorpha) reveals patterns of lineage expansion in a series of new adaptive zones

Structure, Evidence, and Heuristic: Evolutionary Biology, Economics, and the Philosophy of Their Relationship. Routledge Studies in the Philosophy of Science by Armin W. Schulz. New York: Routledge (Taylor & Francis Group). $160.00. xi + 228 p.; ill.; index. ISBN: 978-0-367-46590-2 (hc); 978-1-003-03024-9 (eb). 2020

Ågren, J. Arvid

Part of The Quarterly review of biology, p. 50-50, 2022.

DOI for Structure, Evidence, and Heuristic: Evolutionary Biology, Economics, and the Philosophy of Their Relationship. Routledge Studies in the Philosophy of Science by Armin W. Schulz. New York: Routledge (Taylor & Francis Group). $160.00. xi + 228 p.; ill.; index. ISBN: 978-0-367-46590-2 (hc); 978-1-003-03024-9 (eb). 2020

Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly

Shipilina, Daria; Näsvall, Karin; Höök, Lars; Vila, Roger et al.

Part of Genomics, 2022.

DOI for Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly Download full text (pdf) of Linkage mapping and genome annotation give novel insights into gene family expansions and regional recombination rate variation in the painted lady (Vanessa cardui) butterfly

Concerted evolution of metabolic rate, economics of mating, ecology, and pace of life across seed beetles

Arnqvist, Göran; Rönn, Johanna; Watson, Christopher; Goenaga, Julieta et al.

Part of Proceedings of the National Academy of Sciences of the United States of America, 2022.

DOI for Concerted evolution of metabolic rate, economics of mating, ecology, and pace of life across seed beetles Download full text (pdf) of Concerted evolution of metabolic rate, economics of mating, ecology, and pace of life across seed beetles

Infection by a helminth parasite is associated with changes in DNA methylation in the house sparrow

Lundregan, Sarah L.; Mäkinen, Hannu; Buer, Amberly; Holand, Håkon et al.

Part of Ecology and Evolution, 2022.

DOI for Infection by a helminth parasite is associated with changes in DNA methylation in the house sparrow Download full text (pdf) of Infection by a helminth parasite is associated with changes in DNA methylation in the house sparrow

Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi

Sheikh, Sanea; Kalsoom, Faheema; Bahram, Mohammad; Ryberg, Martin

Part of Scientific Reports, 2022.

DOI for Impact of model assumptions on the inference of the evolution of ectomycorrhizal symbiosis in fungi

Genetic conflicts and the case for licensed anthropomorphizing

Ågren, J. Arvid; Patten, Manus M.

Part of Behavioral Ecology and Sociobiology, 2022.

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Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum

Eshghi Sahraei, Shadi; Sanchez-Garcia, Marisol; Montoliu-Nerin, Merce; Manyara, David et al.

Part of Mycorrhiza, p. 361-371, 2022.

DOI for Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum Download full text (pdf) of Whole genome analyses based on single, field collected spores of the arbuscular mycorrhizal fungus Funneliformis geosporum

Photoperiod controls wing polyphenism in a water strider independently of insulin receptor signalling

Gudmunds, Erik; Narayanan, Shrinath; Lachivier, Elise; Duchemin, Marion et al.

Part of Proceedings of the Royal Society of London. Biological Sciences, 2022.

DOI for Photoperiod controls wing polyphenism in a water strider independently of insulin receptor signalling Download full text (pdf) of Photoperiod controls wing polyphenism in a water strider independently of insulin receptor signalling

Functional genomic tools for emerging model species

Gudmunds, Erik; Wheat, Christopher W.; Khila, Abderrahman; Husby, Arild

Part of Trends in Ecology & Evolution, p. 1104-1115, 2022.

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Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

Lindner, Melanie; Verhagen, Irene; Viitaniemi, Heidi M.; Laine, Veronika N. et al.

Part of BMC Genomics, 2021.

DOI for Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons Download full text (pdf) of Temporal changes in DNA methylation and RNA expression in a small song bird: within- and between-tissue comparisons

A genome-wide investigation of adaptive signatures in protein-coding genes related to tool behaviour in New Caledonian and Hawaiian crows

Dussex, Nicolas; Kutschera, Verena E.; Wiberg, R. Axel W.; Parker, Darren J. et al.

Part of Molecular Ecology, p. 973-986, 2021.

DOI for A genome-wide investigation of adaptive signatures in protein-coding genes related to tool behaviour in New Caledonian and Hawaiian crows

Dynamic sex chromosome expression in Drosophila male germ cells

Mahadevaraju, Sharvani; Fear, Justin M.; Akeju, Miriam; Galletta, Brian J. et al.

Part of Nature Communications, 2021.

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Diversity of Leptogium (Collemataceae, Ascomycota) in East African Montane Ecosystems

Kaasalainen, Ulla; Tuovinen, Veera; Kirika, Paul M.; Mollel, Neduvoto P. et al.

Part of Microorganisms, 2021.

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Mobility patterns in inland southwestern Sweden during the Neolithic and Early Bronze Age

Blank, Malou; Sjogren, Karl-Goran; Knipper, Corina; Frei, Karin M. et al.

Part of Archaeological and Anthropological Sciences, 2021.

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Rapid evolution at the Drosophila telomere: transposable element dynamics at an intrinsically unstable locus

McGurk, Michael P.; Dion-Cote, Anne-Marie; Barbash, Daniel A.

Part of Genetics, 2021.

DOI for Rapid evolution at the Drosophila telomere: transposable element dynamics at an intrinsically unstable locus

Sexual conflict drives micro- and macroevolution of sexual dimorphism in immunity

Bagchi, Basabi; Corbel, Quentin; Khan, Imroze; Payne, Ellen et al.

Part of BMC Biology, 2021.

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Complex interaction networks among cyanolichens of a tropical biodiversity hotspot

Kaasalainen, Ulla; Tuovinen, Veera; Mwachala, Geoffrey; Pellikka, Petri et al.

Part of Frontiers in Microbiology, 2021.

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The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes

Boman, Jesper; Mugal, Carina F.; Backström, Niclas

Part of Genome Biology and Evolution, 2021.

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Size Variation of the Nonrecombining Region on the Mating-Type Chromosomes in the Fungal Podospora anserina Species Complex

Hartmann, Fanny E.; Ament-Velásquez, Sandra Lorena; Vogan, Aaron A.; Gautier, Valerie et al.

Part of Molecular biology and evolution, p. 2475-2492, 2021.

DOI for Size Variation of the Nonrecombining Region on the Mating-Type Chromosomes in the Fungal Podospora anserina Species Complex

Stromal Heterogeneity in the Human Proliferative Endometrium-A Single-Cell RNA Sequencing Study

Queckboerner, Suzanna; von Grothusen, Carolina; Boggavarapu, Nageswara Rao; Francis, Roy M. et al.

Part of Journal of Personalized Medicine, 2021.

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