Every Friday morning
Apr 22: Lin, Z., Chen, L., Chen, X., Zhong, Y., Yang, Y., Xia, W., ... & Yang, Y. (2019). Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus). Science, 364(6446), eaav6312.
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Mar 11: Sendell-Price, A. T., Ruegg, K. C., & Clegg, S. M. (2020). Rapid morphological divergence following a human-mediated introduction: the role of drift and directional selection. Heredity, 124(4), 535-549. https://doi.org/10.1038/s41437-020-0298-8
Feb 26: Simkin, A., Geissler, R., McIntyre, A. B., & Grimson, A. (2020). Evolutionary Dynamics of microRNA target sites across vertebrate evolution. PLoS Genetics, 16(2), e1008285. https://doi.org/10.1371/journal.pgen.1008285
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Nov 29: Sigeman, H., Ponnikas, S., Chauhan, P., Dierickx, E., Brooke, M. D. L., & Hansson, B. (2019). Repeated sex chromosome evolution in vertebrates supported by expanded avian sex chromosomes. Proceedings of the Royal Society B, 286(1916), 20192051. https://doi.org/10.1098/rspb.2019.2051
Nov 22: Kutschera, V. E., Poelstra, J. W., Botero-Castro, F., Dussex, N., Gemmell, N. J., Hunt, G. R., ... & Wolf, J. B. (2020). Purifying selection in corvids is less efficient on islands. Molecular biology and evolution, 37(2), 469-474. https://doi.org/10.1093/molbev/msz233
Nov 9: Lu, M., & He, X. (2019). Centromere repositioning causes inversion of meiosis and generates a reproductive barrier. Proceedings of the National Academy of Sciences, 116(43), 21580-21591. https://doi.org/10.1073/pnas.1911745116
Oct 18: Darbellay, F., & Necsulea, A. (2020). Comparative Transcriptomics Analyses across Species, Organs, and Developmental Stages Reveal Functionally Constrained lncRNAs. Molecular biology and evolution, 37(1), 240-259. https://doi.org/10.1093/molbev/msz212
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Oct 4: Parker, D. J., Bast, J., Jalvingh, K., Dumas, Z., Robinson-Rechavi, M., & Schwander, T. (2019). Repeated evolution of asexuality involves convergent gene expression changes. Molecular biology and evolution, 36(2), 350-364. https://doi.org/10.1093/molbev/msy217
Sep 20: Speidel, L., Forest, M., Shi, S. et al. A method for genome-wide genealogy estimation for thousands of samples. Nat Genet 51, 1321–1329 (2019). https://doi.org/10.1038/s41588-019-0484-x
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June 14: Dumont, B. L. (2019). Significant Strain Variation in the Mutation Spectra of Inbred Laboratory Mice. Molecular biology and evolution.
May 17: Uricchio, L. H., Petrov, D. A., & Enard, D. (2019). Exploiting selection at linked sites to infer the rate and strength of adaptation. Nature ecology & evolution, 1.
May 10: Kim, K. W., Jackson, B. C., Zhang, H., Toews, D. P., Taylor, S. A., Greig, E. I., ... & Zeng, K. (2019). Genetics and evidence for balancing selection of a sex-linked colour polymorphism in a songbird. Nature communications.
Apr 26: Sultana, T., van Essen, D., Siol, O., Bailly-Bechet, M., Philippe, C., El Aabidine, A. Z., ... & Gilbert, N. (2019). The landscape of L1 retrotransposons in the human genome is shaped by pre-insertion sequence biases and post-insertion selection. Molecular cell, 74(3), 555-570.
Apr 12: Sackton, T. B., Grayson, P., Cloutier, A., Hu, Z., Liu, J. S., Wheeler, N. E., ... & Edwards, S. V. (2019). Convergent regulatory evolution and loss of flight in paleognathous birds. Science, 364(6435), 74-78.
Apr 5: Marques, D. A., Meier, J. I., & Seehausen, O. (2019). A combinatorial view on speciation and adaptive radiation. Trends in ecology & evolution.
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Feb 15: Xie et al (2019) DNA fragility in the parallel evolution of pelvic reduction in stickleback fish. Science 363: 81-84
Feb 8: Halldorsson et al (2019) Characterizing mutagenic effects of recombination through a sequence-level genetic map. Science DOI: 10.1126/science.aau1043
Feb 1: Chen et al (2019) A quantitative framework for characterizing the evolutionary history of mammalian gene expression. Genome Res 29: 53-63
Dec 14: Franchini et al (2018) Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish. Nature Communications 9: 5136
Dec 7: Lawson et al (2018) A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots Nature Communications 9: 3258
Nov 30: Li & Ralph (2018) Local PCA Shows How the Effect of Population Structure Differs Along the Genome Genetics doi: 10.1534/genetics.118.301747
Nov 23: Kern & Hahn (2018) The Neutral Theory in Light of Natural Selection Mol. Biol. Evol. 35: 1366–1371
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Nov 2: Tavares et al (2018) Selection and gene flow shape genomic islands that control floral guides PNAS 115: 1006-11011
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Mar 16: Miles et al (2018) Macroevolutionary patterning of woodpecker drums reveals how sexual selection elaborates signals under constraint. Proceedings of the Royal Soceity B DOI: 10.1098/rspb.2017.2628
Mar 9: VanKuren & Long (2018) Gene duplicates resolving sexual conflict rapidly evolved essential gametogenesis functions. Nature Ecology & Evolution 2: 705–712
Mar 2: Mendoza et al (2018) Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nature Ecology & Evolution. doi:10.1038/s41559-018-0476-8
Feb 23: Salmona J., Heller R., Lascoux M., Shafer A. (2017) Inferring Demographic History Using Genomic Data. In: . Population Genomics. Springer, Cham
Feb 16: Rodrigues et al (2018) Sex-Chromosome Recombination in Common Frogs Brings Water to the Fountain-of-Youth. Mol Biol Evol. doi.org/10.1093/molbev/mys008
Feb 9: Kasinathan & Henikoff (2018) Non-B-form DNA is enriched at centromeres. Mol Biol Evol. doi.org/10.1093/molbev/mys010
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Jan 26: Long et al (2018) Evolutionary determinants of genome-wide nucleotide composition. Nature Ecology & Evolution. 2: 237–240.
Jan 19: Bay et al (2018) Genomic signals of selection predict climate-driven population declines in a migratory bird. Science. 359: 83-86.
Dec 14: Schmitz et al (2017) Intron retention enhances gene regulatory complexity in vertebrates. Genome Biology. 18:216
Dec 7: Wu et al (2017) Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives. Genome Biology. 18:217
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Nov 23: Murray et al (2017) Natural selection shaped the rise and fall of passenger pigeon genomic diversity. Science. 17:951-954
Nov 16: Branco et al (2017) Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism. PNAS. 114: 7067–7072
Nov 9: Tataru et al (2017) Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data. Genetics. 207:1103-1119
Oct 26: Bosse et al (2017) Recent natural selection causes adaptive evolution of an avian polygenic trait. Science. 358: 365-368
Oct 19: Blackmon et al (2017) Long-Term Fragility of Y Chromosomes Is Dominated by Short-Term Resolution of Sexual Antagonism. Genetics. doi.org/10.1534/genetics.117.300382
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Oct 5: Yi (2017) Insights into Epigenome Evolution from Animal and Plant Methylomes. GBE. doi.org/10.1093/gbe/evx203
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Mar 31: Dudchenko et al (2017) De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds Science DOI: 10.1126/science.aal3327
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Nov 4: Chen et al (2016) Genomic Consequences of Population Decline in the Endangered Florida Scrub-Jay. Current Biology 26: 1-6
Oct 28: Session et al (2016) Genome evolution in the allotetraploid frog Xenopus laevis. Nature 538: 336–343
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Sep 30: Wang et al (2016) Allele-Specific Transcriptome and Methylome Analysis Reveals Stable Inheritance and Cis-Regulation of DNA Methylation in Nasonia. PLOS Biology DOI:10.1371/journal.pbio.100250
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Apr 8: McDonald et al (2016) Sex speeds adaptation by altering the dynamics of molecular evolution. Nature doi:10.1038/nature17143
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Mar 18: Hernando-Herraez et al (2015) DNA Methylation: Insights into Human Evolution. PLOS Genetics doi: 10.1371/journal.pgen.1005661
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Dec 18: Pipoly et al (2015) The genetic sex-determination system predicts adult sex ratios in tetrapods. Nature 527: 91–94
Dec 11: PAPER (1) Kuper et al (2015) A supergene determines highly divergent male reproductive morphs in the ruff. Nature Genetics doi:10.1038/ng.3443
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Nov 27: Ma et al (2015) Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis. PLOS Genetics doi: 10.1371/journal.pgen.1005387
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