Publikationer

Här är en lista på våra publikationer

  • Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

    GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

    Ingår i Genome Biology, 2019.

    Open access
  • Schweizer, Manuel; Warmuth, Vera; Kakhki, Niloofar Alaei; Aliabadian, Mansour et al.

    Parallel plumage colour evolution and introgressive hybridization in wheatears

    Ingår i Journal of Evolutionary Biology, s. 100-110, 2019.

  • Ekmansalen, Norbyvägen 14 A, Uppsala 2019-02-25 kl 13:00

    Weissensteiner, Matthias H.

    Evolutionary genomics in Corvids: – From single nucleotides to structural variants

    Open access
  • Hart, Michael W.; Stover, Daryn A.; Guerra, Vanessa; Mozaffari, Sahar V. et al.

    Positive selection on human gamete-recognition genes

    Ingår i PeerJ, 2018.

    Open access
  • Suh, Alexander; Smeds, Linnea; Ellegren, Hans

    Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes

    Ingår i Molecular Ecology, s. 99-111, 2018.

    Open access
  • Kardos, Marty; Åkesson, Mikael; Fountain, Toby; Flagstad, Oystein et al.

    Genomic consequences of intensive inbreeding in an isolated wolf population

    Ingår i Nature Ecology & Evolution, s. 124-131, 2018.

  • Burdon, Rosalie C. F.; Junker, Robert R.; Scofield, Douglas; Parachnowitsch, Amy L. et al.

    Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool

    Ingår i Chemoecology, s. 11-19, 2018.

    Open access
  • Craig, Rory J.; Suh, Alexander; Wang, Mi; Ellegren, Hans et al.

    Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis)

    Ingår i Molecular Ecology, s. 476-492, 2018.

    Open access
  • Valdiosera, Cristina; Günther, Torsten; Carlos Vera-Rodriguez, Juan; Urena, Irene et al.

    Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

    Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 3428-3433, 2018.

  • Onuţ-Brännström, Ioana; Benjamin, Mitchell; Scofield, Douglas G.; Starri, Heiðmarsson et al.

    Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing

    Ingår i Scientific Reports, 2018.

    Open access
  • Urbina, Hector; Breed, Martin F.; Zhao, Weizhou; Gurrala, Kanaka Lakshmi et al.

    Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

    Ingår i Fungal Biology, s. 231-240, 2018.

  • Nieuwenhuis, Bart P. S.; Tusso Gomez, Sergio; Bjerling, Pernilla; Stångberg, Josefine et al.

    Repeated evolution of self-compatibility for reproductive assurance

    Ingår i Nature Communications, 2018.

    Open access
  • Fountain, Toby; Husby, Arild; Nonaka, Etsuko; Dileo, Michelle F. et al.

    Inferring dispersal across a fragmented landscape using reconstructed families in the Glanville fritillary butterfly

    Ingår i Evolutionary Applications, s. 287-297, 2018.

    Open access
  • Marsit, Souhir; Dion-Côté, Anne-Marie; Barbash, Daniel A.

    Did Mitochondria Kill the Frog?

    Ingår i Developmental Cell, s. 539-541, 2018.

  • Holt, Carson; Campbell, Michael; Keays, David A.; Edelman, Nathaniel et al.

    Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)

    Ingår i G3, s. 1391-1398, 2018.

    Open access
  • Immonen, Elina; Hämäläinen, Anni; Schuett, Wiebke; Tarka, Maja et al.

    Evolution of sex-specific pace-of-life syndromes: genetic architecture and physiological mechanisms

    Ingår i Behavioral Ecology and Sociobiology, 2018.

    Open access
  • Hämäläinen, Anni; Immonen, Elina; Tarka, Maja; Schuett, Wiebke et al.

    Evolution of sex-specific pace-of-life syndromes: causes and consequences

    Ingår i Behavioral Ecology and Sociobiology, 2018.

  • Wang, Jing; Ding, Jihua; Tan, Biyue; Robinson, Kathryn M. et al.

    A major locus controls local adaptation and adaptive life history variation in a perennial plant

    Ingår i Genome Biology, 2018.

    Open access
  • Leal, Luis; Talla, Venkat; Källman, Thomas; Friberg, Magne et al.

    Gene expression profiling across ontogenetic stages in the wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation

    Ingår i Molecular Ecology, s. 935-948, 2018.

  • Peona, Valentina; Weissensteiner, Matthias; Suh, Alexander

    How complete are "complete" genome assemblies? - An avian perspective

    Ingår i Molecular Ecology Resources, 2018.

    Open access
  • Dinets, Vladimir; Sokolovskis, Kristaps; Hanley, Daniel; Hauber, Mark E. et al.

    Striking difference in response to expanding brood parasites by birds in western and eastern Beringia

    Ingår i Journal of field ornithology, s. 117-125, 2018.

  • Zamora, Juan Carlos; Svensson, Måns; Kirschner, Roland; Olariaga, Ibai et al.

    Considerations and consequences of allowing DNA sequence data as types of fungal taxa

    Ingår i IMA Fungus, s. 167-185, 2018.

    Open access
  • Dahlö, Martin; Scofield, Douglas; Schaal, Wesley; Spjuth, Ola et al.

    Tracking the NGS revolution: managing life science research on shared high-performance computing clusters

    Ingår i GigaScience, 2018.

    Open access
  • Silva, Willian T. A. F.

    Methylation dynamics during the maternal-to-zygotic genome transition in dioecious species

    Ingår i PLoS ONE, 2018.

    Open access
  • Lundregan, Sarah L.; Hagen, Ingerid J.; Gohli, Jostein; Niskanen, Alina K. et al.

    Inferences of genetic architecture of bill morphology in house sparrow using a high-density SNP array point to a polygenic basis

    Ingår i Molecular Ecology, s. 3498-3514, 2018.

  • Lindahlsalen, Evolutionary Biology Centre, Norbyvagan 18, Uppsala 2018-10-19 kl 10:15

    Talla, Venkat

    Speciation genetics of recently diverged species:

    Open access
  • Lindahlsalen, Norbyvägen 18A, Uppsala 2018-11-07 kl 09:00

    Silva, Willian T. A. F.

    Non-genetic processes in development and heredity

    Open access
  • George, T. S.; Giles, C. D.; Menezes-Blackburn, D.; Condron, L. M. et al.

    Correction to: Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities

    Ingår i Plant and Soil, s. 209-211, 2018.

  • George, T. S.; Giles, C. D.; Menezes-Blackburn, D.; Condron, L. M. et al.

    Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities

    Ingår i Plant and Soil, s. 191-208, 2018.

  • Humble, Emily; Dasmahapatra, Kanchon K.; Martínez Barrio, Álvaro; Gregorio, Ines et al.

    RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding

    Ingår i G3, s. 2709-2722, 2018.

  • Anderson, Jennifer L; Nieuwenhuis, Bart P. S.; Johannesson, Hanna

    Asexual reproduction and growth rate: independent and plastic lifehistory traits in Neurospora crassa

    Ingår i The ISME Journal, 2018.

    Open access
  • Guichard, Etienne; Peona, Valentina; Tagliazucchi, Guidantonio Malagoli; Abitante, Lucia et al.

    Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

    Ingår i Mobile DNA, 2018.

    Open access
  • Dutoit, Ludovic; Mugal, Carina; Bolivar, Paulina; Wang, Mi et al.

    Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome

    Ingår i Molecular Ecology, s. 3572-3581, 2018.

    Open access
  • Connallon, Tim; Olito, Colin; Dutoit, Ludovic; Papoli, Homa et al.

    Local adaptation and the evolution of inversions on sex chromosomes and autosomes

    Ingår i Philosophical Transactions of the Royal Society of London. Biological Sciences, 2018.

  • Ekmansalen, EBC, Norrbyvägen 14, Uppsala 2018-11-09 kl 09:00

    Bogusz, Marcin

    Evolutionary Approaches to Sequence Alignment

    Open access
  • Yazdi, Homa Papoli; Ellegren, Hans

    A Genetic Map of Ostrich Z Chromosome and the Role of Inversions in Avian Sex Chromosome Evolution

    Ingår i Genome Biology and Evolution, s. 2049-2060, 2018.

    Open access
  • Ricci, Marco; Peona, Valentina; Guichard, Etienne; Taccioli, Cristian et al.

    Transposable Elements Activity is Positively Related to Rate of Speciation in Mammals

    Ingår i Journal of Molecular Evolution, s. 303-310, 2018.

    Open access
  • Ricci, Marco; Peona, Valentina; Guichard, Etienne; Taccioli, Cristian et al.

    Correction to: Transposable Elements Activity is Positively Related to Rate of Speciation in Mammals

    Ingår i Journal of Molecular Evolution, s. 311-311, 2018.

  • Wang, Mi; Uebbing, Severin; Pawitan, Yudi; Scofield, Douglas G. et al.

    RPASE: Individual-based allele-specific expression detection without prior knowledge of haplotype phase

    Ingår i Molecular Ecology Resources, s. 1247-1262, 2018.

  • Bauerfeind, Stephanie S.; Schaefer, Martin A.; Berger, David; Blanckenhorn, Wolf U. et al.

    Replicated latitudinal clines in reproductive traits of European and North American yellow dung flies

    Ingår i Oikos, s. 1619-1632, 2018.

  • Whelan, Simon; Irisarri, Iker; Burki, Fabien

    PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences

    Ingår i Bioinformatics, s. 3929-3930, 2018.

  • Stoffel, M. A.; Humble, E.; Paijmans, A. J.; Acevedo-Whitehouse, K. et al.

    Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history

    Ingår i Nature Communications, 2018.

    Open access
  • Milani, Diogo; Bardella, Vanessa B.; Ferretti, Ana B. S. M.; Palacios Gimenez, Octavio Manuel et al.

    Satellite DNAs Unveil Clues about the Ancestry and Composition of B Chromosomes in Three Grasshopper Species

    Ingår i Genes, 2018.

    Open access
  • Bolivar, Paulina; Mugal, Carina; Sebastiano, Matteo Rossi; Nater, Alexander et al.

    Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It

    Ingår i Molecular biology and evolution, s. 2475-2486, 2018.

    Open access
  • Kemppainen, Petri; Husby, Arild

    Accounting for heteroscedasticity and censoring in chromosome partitioning analyses

    Ingår i EVOLUTION LETTERS, s. 599 599-609 609, 2018.

    Open access
  • DiLeo, Michelle F.; Husby, Arild; Saastamoinen, Marjo

    Landscape permeability and individual variation in a dispersal-linked gene jointly determine genetic structure in the Glanville fritillary butterfly

    Ingår i EVOLUTION LETTERS, s. 544 544-556 556, 2018.

    Open access
  • Kutter, C; Jern, Patric; Suh, Alexander

    Bridging gaps in transposable element research with single-molecule and single-cell technologies

    Ingår i Mobile DNA, 2018.

    Open access
  • Stam, Remco; Münsterkötter, Martin; Pophaly, Saurabh Dilip; Fokkens, Like et al.

    A New Reference Genome Shows the One-Speed Genome Structure of the Barley Pathogen Ramularia collo-cygni

    Ingår i Genome Biology and Evolution, s. 3243-3249, 2018.

    Open access
  • Peona, Valentina; Weissensteiner, Matthias; Suh, Alexander

    How complete are 'complete' genome assemblies? - An avian perspective

    Ingår i Molecular Ecology Resources, 2018.

  • Maklakov, Alex A; Carlsson, Hanne; Denbaum, Philip; Lind, Martin I. et al.

    Antagonistically pleiotropic allele increases lifespan and late-life reproduction at the cost of early-life reproduction and individual fitness

    Ingår i Proceedings of the Royal Society of London. Biological Sciences, 2017.