Publikationer

Schweizer, Manuel; Warmuth, Vera; Kakhki, Niloofar Alaei; Aliabadian, Mansour et al.

Parallel plumage colour evolution and introgressive hybridization in wheatears

Ingår i Journal of Evolutionary Biology, s. 100-110, 2019.

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Gunnarsson, Karl; Ekblom, Robert

Review of the diet specialisation of the Blue-cheeked bee-eater (Merops persicus)

Ingår i Journal of Ornithology, s. 275-279, 2019.

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Bayram, Helen L.; Sayadi, Ahmed; Immonen, Elina; Arnqvist, Göran et al.

Identification of novel ejaculate proteins in a seed beetle and division of labour across male accessory reproductive glands

Ingår i Insect biochemistry and molecular biology, s. 50 50-57 57, 2019.

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Weissensteiner, Matthias H.

Evolutionary genomics in Corvids: – From single nucleotides to structural variants

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Wu, Chi-Chih; Klaesson, Axel; Buskas, Julia; Ranefall, Petter et al.

In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation

Ingår i Journal of Experimental Biology, 2019.

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Warmuth, Vera; Ellegren, Hans

Genotype-free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data

Ingår i Molecular Ecology Resources, s. 586-596, 2019.

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Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

Ingår i Genome Biology, 2019.

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Knief, Ulrich; Bossu, Christen M.; Saino, Nicola; Hansson, Bengt et al.

Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone

Ingår i Nature Ecology & Evolution, s. 570-576, 2019.

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Ramnarine, Timothy J. S.; Glaser-Schmitt, Amanda; Catalan, Ana; Parsch, John et al.

Population Genetic and Functional Analysis of a cis-Regulatory Polymorphism in the Drosophila melanogaster Metallothionein A gene

Ingår i Genes, 2019.

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Alavioon, Ghazal; Garcia, Andrea Cabrera; LeChatelier, Magali; Maklakov, Alex A. et al.

Selection for longer lived sperm within ejaculate reduces reproductive ageing in offspring

Ingår i EVOLUTION LETTERS, s. 198 198-206 206, 2019.

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Richert, Inga; Yager, Patricia L.; Dinasquet, Julie; Logares, Ramiro et al.

Summer comes to the Southern Ocean: How phytoplankton shape bacterioplankton communities far into the deep dark sea

Ingår i Ecosphere, 2019.

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Suh, Alexander

Genome Size Evolution: Small Transposons with Large Consequences

Ingår i Current Biology, s. R241-R243, 2019.

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Rettelbach, Agnes; Nater, Alexander; Ellegren, Hans

How Linked Selection Shapes the Diversity Landscape in Ficedula Flycatchers

Ingår i Genetics, s. 277-285, 2019.

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Bolívar, Paulina

Rates and patterns of molecular evolution in avian genomes

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Boman, Jesper; Frankl-Vilches, Carolina; dos Santos, Michelly da Silva; de Oliveira, Edivaldo H. C. et al.

The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch

Ingår i Genes, 2019.

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Bernhardsson, Carolina; Vidalis, Amaryllis; Wang, Xi; Scofield, Douglas et al.

An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)

Ingår i G3, s. 1623-1632, 2019.

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Xu, Luohao; Auer, Gabriel; Peona, Valentina; Suh, Alexander et al.

Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds

Ingår i Nature Ecology & Evolution, s. 834-844, 2019.

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Ferretti, Ana B. S. M.; Ruiz-Ruano, Francisco J.; Milani, Diogo; Loreto, Vilma et al.

How dynamic could be the 45S rDNA cistron?: An intriguing variability in a grasshopper species revealed by integration of chromosomal and genomic data

Ingår i Chromosoma, s. 165-175, 2019.

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Nadachowska-Brzyska, Krystyna; Burri, Reto; Ellegren, Hans

Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers

Ingår i Molecular Ecology, s. 2290-2304, 2019.

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Grosser, Stefanie; Sauer, Jan; Paijmans, Anneke J.; Caspers, Barbara A. et al.

Fur seal microbiota are shaped by the social and physical environment, show mother-offspring similarities and are associated with host genetic quality

Ingår i Molecular Ecology, s. 2406-2422, 2019.

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Smeds, Linnea; Kojola, Ilpo; Ellegren, Hans

The evolutionary history of grey wolf Y chromosomes

Ingår i Molecular Ecology, s. 2173-2191, 2019.

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Hooper, Rebecca; Brealey, Jaelle C.; van der Valk, Tom; Alberdi, Antton et al.

Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

Ingår i Molecular Ecology, s. 484-502, 2019.

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Anderson, Jennifer L; Nieuwenhuis, Bart P. S.; Johannesson, Hanna

Asexual reproduction and growth rate: independent and plastic lifehistory traits in Neurospora crassa

Ingår i The ISME Journal, s. 780-788, 2019.

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Ottenburghs, Jente

Multispecies hybridization in birds

Ingår i Avian Research, 2019.

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Silva, Willian T. A. F.; Sáez-Espinosa, Paula; Torrijo-Boix, Stéphanie; Romero, Alejandro et al.

The effects of male social environment on sperm phenotype and genome integrity

Ingår i Journal of Evolutionary Biology, s. 535-544, 2019.

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Prost, Stefan; Armstrong, Ellie E.; Nylander, Johan; Thomas, Gregg W. C. et al.

Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise

Ingår i GigaScience, 2019.

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Tusso, Sergio; Nieuwenhuis, Bart P. S.; Sedlazeck, Fritz J.; Davey, John W. et al.

Ancestral admixture is the main determinant of global biodiversity in fission yeast

Ingår i Molecular Biology and Evolution, 2019.

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Tao, Yu-Tian; Suo, Fang; Tusso, Sergio; Wang, Yan-Kai et al.

Intraspecific diversity of fission yeast mitochondrial genomes

Ingår i Genome Biology and Evolution, 2019.

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Wang, Mi

Gene regulatory evolution in flycatchers: statistical approaches for the analysis of allele-specific expression

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Ellegren, Hans

Hvad nytt och nyttigt: Tillkomsten av Sveriges första lärda sällskap: Kungl. Vetenskaps-Societeten i Uppsala

Acta Universitatis Upsaliensis, 2019.

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Hart, Michael W.; Stover, Daryn A.; Guerra, Vanessa; Mozaffari, Sahar V. et al.

Positive selection on human gamete-recognition genes

Ingår i PeerJ, 2018.

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Suh, Alexander; Smeds, Linnea; Ellegren, Hans

Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes

Ingår i Molecular Ecology, s. 99-111, 2018.

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Kardos, Marty; Åkesson, Mikael; Fountain, Toby; Flagstad, Oystein et al.

Genomic consequences of intensive inbreeding in an isolated wolf population

Ingår i Nature Ecology & Evolution, s. 124-131, 2018.

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Burdon, Rosalie C. F.; Junker, Robert R.; Scofield, Douglas; Parachnowitsch, Amy L. et al.

Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool

Ingår i Chemoecology, s. 11-19, 2018.

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Craig, Rory J.; Suh, Alexander; Wang, Mi; Ellegren, Hans et al.

Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis)

Ingår i Molecular Ecology, s. 476-492, 2018.

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Valdiosera, Cristina; Günther, Torsten; Carlos Vera-Rodriguez, Juan; Urena, Irene et al.

Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

Ingår i Proceedings of the National Academy of Sciences of the United States of America, s. 3428-3433, 2018.

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Onuţ-Brännström, Ioana; Benjamin, Mitchell; Scofield, Douglas G.; Starri, Heiðmarsson et al.

Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing

Ingår i Scientific Reports, 2018.

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Urbina, Hector; Breed, Martin F.; Zhao, Weizhou; Gurrala, Kanaka Lakshmi et al.

Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

Ingår i Fungal Biology, s. 231-240, 2018.

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Nieuwenhuis, Bart P. S.; Tusso Gomez, Sergio; Bjerling, Pernilla; Stångberg, Josefine et al.

Repeated evolution of self-compatibility for reproductive assurance

Ingår i Nature Communications, 2018.

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Fountain, Toby; Husby, Arild; Nonaka, Etsuko; Dileo, Michelle F. et al.

Inferring dispersal across a fragmented landscape using reconstructed families in the Glanville fritillary butterfly

Ingår i Evolutionary Applications, s. 287-297, 2018.

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Marsit, Souhir; Dion-Côté, Anne-Marie; Barbash, Daniel A.

Did Mitochondria Kill the Frog?

Ingår i Developmental Cell, s. 539-541, 2018.

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Holt, Carson; Campbell, Michael; Keays, David A.; Edelman, Nathaniel et al.

Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)

Ingår i G3, s. 1391-1398, 2018.

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Immonen, Elina; Hämäläinen, Anni; Schuett, Wiebke; Tarka, Maja et al.

Evolution of sex-specific pace-of-life syndromes: genetic architecture and physiological mechanisms

Ingår i Behavioral Ecology and Sociobiology, 2018.

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Hämäläinen, Anni; Immonen, Elina; Tarka, Maja; Schuett, Wiebke et al.

Evolution of sex-specific pace-of-life syndromes: causes and consequences

Ingår i Behavioral Ecology and Sociobiology, 2018.

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Wang, Jing; Ding, Jihua; Tan, Biyue; Robinson, Kathryn M. et al.

A major locus controls local adaptation and adaptive life history variation in a perennial plant

Ingår i Genome Biology, 2018.

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Leal, Luis; Talla, Venkat; Källman, Thomas; Friberg, Magne et al.

Gene expression profiling across ontogenetic stages in the wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation

Ingår i Molecular Ecology, s. 935-948, 2018.

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Dinets, Vladimir; Sokolovskis, Kristaps; Hanley, Daniel; Hauber, Mark E. et al.

Striking difference in response to expanding brood parasites by birds in western and eastern Beringia

Ingår i Journal of field ornithology, s. 117-125, 2018.

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Zamora, Juan Carlos; Svensson, Måns; Kirschner, Roland; Olariaga, Ibai et al.

Considerations and consequences of allowing DNA sequence data as types of fungal taxa

Ingår i IMA Fungus, s. 167-185, 2018.

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Dahlö, Martin; Scofield, Douglas; Schaal, Wesley; Spjuth, Ola et al.

Tracking the NGS revolution: managing life science research on shared high-performance computing clusters

Ingår i GigaScience, 2018.

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Silva, Willian T. A. F.

Methylation dynamics during the maternal-to-zygotic genome transition in dioecious species

Ingår i PLoS ONE, 2018.

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