Publications

Here is a list of our publications

  • Schweizer, Manuel; Warmuth, Vera; Kakhki, Niloofar Alaei; Aliabadian, Mansour et al.

    Parallel plumage colour evolution and introgressive hybridization in wheatears

    Part of Journal of Evolutionary Biology, p. 100-110, 2019.

  • Gunnarsson, Karl; Ekblom, Robert

    Review of the diet specialisation of the Blue-cheeked bee-eater (Merops persicus)

    Part of Journal of Ornithology, p. 275-279, 2019.

  • Bayram, Helen L.; Sayadi, Ahmed; Immonen, Elina; Arnqvist, Göran et al.

    Identification of novel ejaculate proteins in a seed beetle and division of labour across male accessory reproductive glands

    Part of Insect biochemistry and molecular biology, p. 50 50-57 57, 2019.

  • Ekmansalen, Norbyvägen 14 A, Uppsala 2019-02-25 13:00

    Weissensteiner, Matthias H.

    Evolutionary genomics in Corvids: – From single nucleotides to structural variants

    Open access
  • Wu, Chi-Chih; Klaesson, Axel; Buskas, Julia; Ranefall, Petter et al.

    In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation

    Part of Journal of Experimental Biology, 2019.

  • Warmuth, Vera; Ellegren, Hans

    Genotype-free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data

    Part of Molecular Ecology Resources, p. 586-596, 2019.

  • Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

    GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

    Part of Genome Biology, 2019.

    Open access
  • Knief, Ulrich; Bossu, Christen M.; Saino, Nicola; Hansson, Bengt et al.

    Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone

    Part of Nature Ecology & Evolution, p. 570-576, 2019.

  • Ramnarine, Timothy J. S.; Glaser-Schmitt, Amanda; Catalan, Ana; Parsch, John et al.

    Population Genetic and Functional Analysis of a cis-Regulatory Polymorphism in the Drosophila melanogaster Metallothionein A gene

    Part of Genes, 2019.

    Open access
  • Alavioon, Ghazal; Garcia, Andrea Cabrera; LeChatelier, Magali; Maklakov, Alex A. et al.

    Selection for longer lived sperm within ejaculate reduces reproductive ageing in offspring

    Part of EVOLUTION LETTERS, p. 198 198-206 206, 2019.

    Open access
  • Richert, Inga; Yager, Patricia L.; Dinasquet, Julie; Logares, Ramiro et al.

    Summer comes to the Southern Ocean: How phytoplankton shape bacterioplankton communities far into the deep dark sea

    Part of Ecosphere, 2019.

    Open access
  • Suh, Alexander

    Genome Size Evolution: Small Transposons with Large Consequences

    Part of Current Biology, p. R241-R243, 2019.

  • Rettelbach, Agnes; Nater, Alexander; Ellegren, Hans

    How Linked Selection Shapes the Diversity Landscape in Ficedula Flycatchers

    Part of Genetics, p. 277-285, 2019.

    Open access
  • Evolutionary Biology Center, Norbyvägen 14, Uppsala 2019-06-11 13:00

    Bolívar, Paulina

    Rates and patterns of molecular evolution in avian genomes

    Open access
  • Boman, Jesper; Frankl-Vilches, Carolina; dos Santos, Michelly da Silva; de Oliveira, Edivaldo H. C. et al.

    The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch

    Part of Genes, 2019.

    Open access
  • Bernhardsson, Carolina; Vidalis, Amaryllis; Wang, Xi; Scofield, Douglas et al.

    An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)

    Part of G3, p. 1623-1632, 2019.

  • Xu, Luohao; Auer, Gabriel; Peona, Valentina; Suh, Alexander et al.

    Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds

    Part of Nature Ecology & Evolution, p. 834-844, 2019.

  • Ferretti, Ana B. S. M.; Ruiz-Ruano, Francisco J.; Milani, Diogo; Loreto, Vilma et al.

    How dynamic could be the 45S rDNA cistron?: An intriguing variability in a grasshopper species revealed by integration of chromosomal and genomic data

    Part of Chromosoma, p. 165-175, 2019.

  • Nadachowska-Brzyska, Krystyna; Burri, Reto; Ellegren, Hans

    Footprints of adaptive evolution revealed by whole Z chromosomes haplotypes in flycatchers

    Part of Molecular Ecology, p. 2290-2304, 2019.

    Open access
  • Grosser, Stefanie; Sauer, Jan; Paijmans, Anneke J.; Caspers, Barbara A. et al.

    Fur seal microbiota are shaped by the social and physical environment, show mother-offspring similarities and are associated with host genetic quality

    Part of Molecular Ecology, p. 2406-2422, 2019.

  • Smeds, Linnea; Kojola, Ilpo; Ellegren, Hans

    The evolutionary history of grey wolf Y chromosomes

    Part of Molecular Ecology, p. 2173-2191, 2019.

    Open access
  • Hooper, Rebecca; Brealey, Jaelle C.; van der Valk, Tom; Alberdi, Antton et al.

    Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

    Part of Molecular Ecology, p. 484-502, 2019.

    Open access
  • Anderson, Jennifer L; Nieuwenhuis, Bart P. S.; Johannesson, Hanna

    Asexual reproduction and growth rate: independent and plastic lifehistory traits in Neurospora crassa

    Part of The ISME Journal, p. 780-788, 2019.

    Open access
  • Ottenburghs, Jente

    Multispecies hybridization in birds

    Part of Avian Research, 2019.

    Open access
  • Silva, Willian T. A. F.; Sáez-Espinosa, Paula; Torrijo-Boix, Stéphanie; Romero, Alejandro et al.

    The effects of male social environment on sperm phenotype and genome integrity

    Part of Journal of Evolutionary Biology, p. 535-544, 2019.

    Open access
  • Prost, Stefan; Armstrong, Ellie E.; Nylander, Johan; Thomas, Gregg W. C. et al.

    Comparative analyses identify genomic features potentially involved in the evolution of birds-of-paradise

    Part of GigaScience, 2019.

    Open access
  • Tusso, Sergio; Nieuwenhuis, Bart P. S.; Sedlazeck, Fritz J.; Davey, John W. et al.

    Ancestral admixture is the main determinant of global biodiversity in fission yeast

    Part of Molecular Biology and Evolution, 2019.

  • Tao, Yu-Tian; Suo, Fang; Tusso, Sergio; Wang, Yan-Kai et al.

    Intraspecific diversity of fission yeast mitochondrial genomes

    Part of Genome Biology and Evolution, 2019.

  • Lindahlsalen, Norbyvägen 14, Uppsala 2019-09-04 13:00

    Wang, Mi

    Gene regulatory evolution in flycatchers: statistical approaches for the analysis of allele-specific expression

    Open access
  • Ellegren, Hans

    Hvad nytt och nyttigt: Tillkomsten av Sveriges första lärda sällskap: Kungl. Vetenskaps-Societeten i Uppsala

    Acta Universitatis Upsaliensis, 2019.

    Open access
  • Hart, Michael W.; Stover, Daryn A.; Guerra, Vanessa; Mozaffari, Sahar V. et al.

    Positive selection on human gamete-recognition genes

    Part of PeerJ, 2018.

    Open access
  • Suh, Alexander; Smeds, Linnea; Ellegren, Hans

    Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes

    Part of Molecular Ecology, p. 99-111, 2018.

    Open access
  • Kardos, Marty; Åkesson, Mikael; Fountain, Toby; Flagstad, Oystein et al.

    Genomic consequences of intensive inbreeding in an isolated wolf population

    Part of Nature Ecology & Evolution, p. 124-131, 2018.

  • Burdon, Rosalie C. F.; Junker, Robert R.; Scofield, Douglas; Parachnowitsch, Amy L. et al.

    Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool

    Part of Chemoecology, p. 11-19, 2018.

    Open access
  • Craig, Rory J.; Suh, Alexander; Wang, Mi; Ellegren, Hans et al.

    Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis)

    Part of Molecular Ecology, p. 476-492, 2018.

    Open access
  • Valdiosera, Cristina; Günther, Torsten; Carlos Vera-Rodriguez, Juan; Urena, Irene et al.

    Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3428-3433, 2018.

  • Onuţ-Brännström, Ioana; Benjamin, Mitchell; Scofield, Douglas G.; Starri, Heiðmarsson et al.

    Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing

    Part of Scientific Reports, 2018.

    Open access
  • Urbina, Hector; Breed, Martin F.; Zhao, Weizhou; Gurrala, Kanaka Lakshmi et al.

    Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

    Part of Fungal Biology, p. 231-240, 2018.

  • Nieuwenhuis, Bart P. S.; Tusso Gomez, Sergio; Bjerling, Pernilla; Stångberg, Josefine et al.

    Repeated evolution of self-compatibility for reproductive assurance

    Part of Nature Communications, 2018.

    Open access
  • Fountain, Toby; Husby, Arild; Nonaka, Etsuko; Dileo, Michelle F. et al.

    Inferring dispersal across a fragmented landscape using reconstructed families in the Glanville fritillary butterfly

    Part of Evolutionary Applications, p. 287-297, 2018.

    Open access
  • Marsit, Souhir; Dion-Côté, Anne-Marie; Barbash, Daniel A.

    Did Mitochondria Kill the Frog?

    Part of Developmental Cell, p. 539-541, 2018.

  • Holt, Carson; Campbell, Michael; Keays, David A.; Edelman, Nathaniel et al.

    Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)

    Part of G3, p. 1391-1398, 2018.

    Open access
  • Immonen, Elina; Hämäläinen, Anni; Schuett, Wiebke; Tarka, Maja et al.

    Evolution of sex-specific pace-of-life syndromes: genetic architecture and physiological mechanisms

    Part of Behavioral Ecology and Sociobiology, 2018.

    Open access
  • Hämäläinen, Anni; Immonen, Elina; Tarka, Maja; Schuett, Wiebke et al.

    Evolution of sex-specific pace-of-life syndromes: causes and consequences

    Part of Behavioral Ecology and Sociobiology, 2018.

  • Wang, Jing; Ding, Jihua; Tan, Biyue; Robinson, Kathryn M. et al.

    A major locus controls local adaptation and adaptive life history variation in a perennial plant

    Part of Genome Biology, 2018.

    Open access
  • Leal, Luis; Talla, Venkat; Källman, Thomas; Friberg, Magne et al.

    Gene expression profiling across ontogenetic stages in the wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation

    Part of Molecular Ecology, p. 935-948, 2018.

  • Dinets, Vladimir; Sokolovskis, Kristaps; Hanley, Daniel; Hauber, Mark E. et al.

    Striking difference in response to expanding brood parasites by birds in western and eastern Beringia

    Part of Journal of field ornithology, p. 117-125, 2018.

  • Zamora, Juan Carlos; Svensson, Måns; Kirschner, Roland; Olariaga, Ibai et al.

    Considerations and consequences of allowing DNA sequence data as types of fungal taxa

    Part of IMA Fungus, p. 167-185, 2018.

    Open access
  • Dahlö, Martin; Scofield, Douglas; Schaal, Wesley; Spjuth, Ola et al.

    Tracking the NGS revolution: managing life science research on shared high-performance computing clusters

    Part of GigaScience, 2018.

    Open access
  • Silva, Willian T. A. F.

    Methylation dynamics during the maternal-to-zygotic genome transition in dioecious species

    Part of PLoS ONE, 2018.

    Open access