Department of Ecology and Genetics

Publikationer

Här är en lista på våra publikationer

  • Hart, Michael W.; Stover, Daryn A.; Guerra, Vanessa; Mozaffari, Sahar V. et al.

    Positive selection on human gamete-recognition genes

    Part of PeerJ, 2018.

  • Suh, Alexander; Smeds, Linnea; Ellegren, Hans

    Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes

    Part of Molecular Ecology, p. 99-111, 2018.

  • Kardos, Marty; Åkesson, Mikael; Fountain, Toby; Flagstad, Oystein et al.

    Genomic consequences of intensive inbreeding in an isolated wolf population

    Part of Nature Ecology & Evolution, p. 124-131, 2018.

  • Burdon, Rosalie C. F.; Junker, Robert R.; Scofield, Douglas; Parachnowitsch, Amy L. et al.

    Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool

    Part of Chemoecology, p. 11-19, 2018.

  • Craig, Rory J.; Suh, Alexander; Wang, Mi; Ellegren, Hans et al.

    Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis)

    Part of Molecular Ecology, p. 476-492, 2018.

  • Valdiosera, Cristina; Günther, Torsten; Carlos Vera-Rodriguez, Juan; Urena, Irene et al.

    Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3428-3433, 2018.

  • Onuţ-Brännström, Ioana; Benjamin, Mitchell; Scofield, Douglas G.; Starri, Heiðmarsson et al.

    Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing

    Part of Scientific Reports, 2018.

  • Leal, Luis; Talla, Venkat; Källman, Thomas; Friberg, Magne et al.

    Gene expression profiling across ontogenetic stages in the wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation

    Part of Molecular Ecology, p. 935-948, 2018.

  • Urbina, Hector; Breed, Martin F.; Zhao, Weizhou; Gurrala, Kanaka Lakshmi et al.

    Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

    Part of Fungal Biology, p. 231-240, 2018.

  • Maklakov, Alex A; Carlsson, Hanne; Denbaum, Philip; Lind, Martin I. et al.

    Antagonistically pleiotropic allele increases lifespan and late-life reproduction at the cost of early-life reproduction and individual fitness

    Part of Proceedings of the Royal Society of London. Biological Sciences, 2017.

  • Hollund, H. I.; Teasdale, M. D.; Mattiangeli, V.; Sverrisdóttir, Oddný Ósk et al.

    Pick the Right Pocket. Sub-sampling of Bone Sections to Investigate Diagenesis and DNA Preservation

    Part of International journal of osteoarchaeology, p. 365-374, 2017.

  • Weissensteiner, Matthias H.; Pang, Andy W. C.; Bunikis, Ignas; Höijer, Ida et al.

    Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications

    Part of Genome Research, p. 697-708, 2017.

  • Promerová, Marta; Alavioon, Ghazal; Tusso Gomez, Sergio; Burri, Reto et al.

    No evidence for MHC class II-based non-random mating at the gametic haplotype in Atlantic salmon

    Part of Heredity, p. 563-567, 2017.

  • Récapet, Charlotte; Bize, Pierre; Doligez, Blandine

    Food availability modulates differences in parental effort between dispersing and philopatric birds

    Part of Behavioral Ecology, p. 688-697, 2017.

  • Daniels, Pablo P.; Baroni, Timothy J.; Hama, Oumarou; Kluting, Kerri et al.

    A new species and a new combination of Rhodophana (Entolomataceae, Agaricales) from Africa

    Part of Phytotaxa, p. 223-233, 2017.

  • Owers, Katharine A.; Sjödin, Per; Schlebusch, Carina M.; Skoglund, Pontus et al.

    Adaptation to infectious disease exposure in indigenous Southern African populations

    Part of Proceedings of the Royal Society of London. Biological Sciences, 2017.

  • Cheeke, Tanya E.; Phillips, Richard P.; Brzostek, Edward R.; Rosling, Anna et al.

    Dominant mycorrhizal association of trees alters carbon and nutrient cycling by selecting for microbial groups with distinct enzyme function

    Part of New Phytologist, p. 432-442, 2017.

  • Wadsworth, Caroline; Procopio, Noemi; Anderung, Cecilia; Carretero, Jose-Miguel et al.

    Comparing ancient DNA survival and proteome content in 69 archaeological cattle tooth and bone samples from multiple European sites

    Part of Journal of Proteomics, p. 1-8, 2017.

  • Zajitschek, Susanne; Herbert-Read, James E.; Abbasi, Nasir M.; Zajitschek, Felix et al.

    Paternal personality and social status influence offspring activity in zebrafish

    Part of BMC Evolutionary Biology, 2017.

  • Adrian-Kalchhauser, Irene; Svensson, Ola; Kutschera, Verena E.; Rosenblad, Magnus Alm et al.

    The mitochondrial genome sequences of the round goby and the sand goby reveal patterns of recent evolution in gobiid fish

    Part of BMC Genomics, 2017.

  • Sotero-Caio, Cibele G.; Platt, Roy N., II; Suh, Alexander; Ray, David A. et al.

    Evolution and Diversity of Transposable Elements in Vertebrate Genomes

    Part of Genome Biology and Evolution, p. 161-177, 2017.

  • Rymesova, Dana; Kralova, Tereza; Promerova, Marta; Bryja, Josef et al.

    Mate choice for major histocompatibility complex complementarity in a strictly monogamous bird, the grey partridge (Perdix perdix)

    Part of Frontiers in Zoology, 2017.

  • Kapusta, Aurelie; Suh, Alexander; Feschotte, Cedric

    Dynamics of genome size evolution in birds and mammals

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. E1460-E1469, 2017.

  • Amininasab, Seyed Mehdi; Xu, Charles C. Y.; Kingma, Sjouke A.; Komdeur, Jan et al.

    Effect of tree logging on reproductive performance in Blue Tits (Cyanistes caeruleus)

    Part of Journal of Ornithology = Journal fur Ornithologie, p. 339-344, 2017.

  • Francis, Roy M.

    POPHELPER: an R package and web app to analyse and visualize population structure

    Part of Molecular Ecology Resources, p. 27-32, 2017.

  • Shipilina, Daria; Serbyn, Maksym; Ivanitskii, Vladimir; Marova, Irina et al.

    Patterns of genetic, phenotypic, and acoustic variation across a chiffchaff (Phylloscopus collybita abietinus/tristis) hybrid zone

    Part of Ecology and Evolution, p. 2169-2180, 2017.

  • Steige, Kim A.; Laenen, Benjamin; Reimegård, Johan; Scofield, Douglas G. et al.

    Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 1087-1092, 2017.

  • Bogusz, Marcin; Whelan, Simon

    Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and Benchmarking

    Part of Systematic Biology, p. 218-231, 2017.

  • Lindahlsalen, Evolutionary Biology Centre, EBC, Norbyvägen 14, Uppsala 2017-06-09 13:00

    Hermans Née Hotzy, Cosima

    Selection in sperm and its consequences: Exploring haploid selection, ageing and epigenetic effects in sperm

  • Kapusta, Aurelie; Suh, Alexander

    Evolution of bird genomes-a transposon's-eye view

    Part of Annals of the New York Academy of Sciences, p. 164-185, 2017.

  • Hedrick, Philip W.; Kardos, Marty; Peterson, Rolf O.; Vucetich, John A. et al.

    Genomic Variation of Inbreeding and Ancestry in the Remaining Two Isle Royale Wolves

    Part of Journal of Heredity, p. 120-126, 2017.

  • Höglund, Jacob; Wang, Biao; Sæther, Stein Are; Blom, Mozes Pil Kyu et al.

    Blood transcriptomes and de novo identification of candidate loci for mating success in lekking great snipe (Gallinago media)

    Part of Molecular Ecology, p. 3458-3471, 2017.

  • Griesser, Michael; Mourocq, Emeline; Barnaby, Jonathan; Bowgen, Katharine M. et al.

    Experience buffers extrinsic mortality in a group-living bird species

    Part of Oikos, p. 1258-1268, 2017.

  • Shafer, Aaron B. A.; Peart, Claire R.; Tusso, Sergio; Maayan, Inbar et al.

    Bioinformatic processing of RAD-seq data dramatically impacts downstream population genetic inference

    Part of Methods in Ecology and Evolution, p. 907-917, 2017.

  • Lauber, Chris; Seitz, Stefan; Mattei, Simone; Suh, Alexander et al.

    Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses

    Part of Cell Host and Microbe, p. 387-399,e1-e6, 2017.

  • Talla, Venkat; Suh, Alexander; Kalsoom, Faheema; Dinca, Vlad et al.

    Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies

    Part of Genome Biology and Evolution, p. 2491-2505, 2017.

  • Suh, Alexander; Bachg, Sandra; Donnellan, Stephen; Joseph, Leo et al.

    De-novo emergence of SINE retroposons during the early evolution of passerine birds

    Part of Mobile DNA, 2017.

  • Wang, Mi; Uebbing, Severin; Ellegren, Hans

    Bayesian Inference of Allele-Specific Gene Expression Indicates Abundant Cis-Regulatory Variation in Natural Flycatcher Populations

    Part of Genome Biology and Evolution, p. 1266-1279, 2017.

  • Knief, Ulrich; Schielzeth, Holger; Backström, Niclas; Hemmrich-Stanisak, Georg et al.

    Association mapping of morphological traits in wild and captive zebra finches: reliable within, but not between populations

    Part of Molecular Ecology, p. 1285-1305, 2017.

  • Wolf, Jochen B. W.; Ellegren, Hans

    Making sense of genomic islands of differentiation in light of speciation

    Part of Nature reviews genetics, p. 87-100, 2017.

  • Kardos, Marty; Qvarnström, Anna; Ellegren, Hans

    Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences

    Part of Genetics, p. 1319-1334, 2017.

  • Ellegren, Hans; Wolf, Jochen B. W.

    Parallelism in genomic landscapes of differentiation, conserved genomic features and the role of linked selection

    Part of Journal of Evolutionary Biology, p. 1516-1518, 2017.

  • Kawakami, Takeshi; Mugal, Carina; Suh, Alexander; Nater, Alexander et al.

    Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds

    Part of Molecular Ecology, p. 4158-4172, 2017.

  • Vijay, Nagarjun; Weissensteiner, Matthias; Burri, Reto; Kawakami, Takeshi et al.

    Genomewide patterns of variation in genetic diversity are shared among populations, species and higher-order taxa

    Part of Molecular Ecology, p. 4284-4295, 2017.

  • Dutoit, Ludovic; Vijay, Nagarjun; Mugal, Carina F.; Bossu, Christen M. et al.

    Covariation in levels of nucleotide diversity in homologous regions of the avian genome long after completion of lineage sorting

    Part of Proceedings of the Royal Society of London. Biological Sciences, 2017.

  • Dutoit, Ludovic; Burri, Reto; Nater, Alexander; Mugal, Carina F. et al.

    Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome

    Part of Molecular Ecology Resources, p. 586-597, 2017.

  • Ekblom, Robert; Biao, Wang

    Development of transcriptome genetic markers for the great snipe (Gallinago media)

    Part of Conservation Genetics Resources, p. 643-645, 2017.

  • Talla, Venkat; Kalsoom, Faheema; Shipilina, Daria; Marova, Irina et al.

    Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff (Phylloscopus collybita abietinus/P. tristis)

    Part of G3, p. 3983-3998, 2017.

  • Ekmansalen, Norbyvägen 14 A, Uppsala 2017-12-08 10:00

    Dutoit, Ludovic

    Determinants of genomic diversity in the collared flycatcher (Ficedula albicollis)

  • Cossu, Rosa Maria; Casola, Claudio; Giacomello, Stefania; Vidalis, Amaryllis et al.

    LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes

    Part of Genome Biology and Evolution, p. 3449-3462, 2017.