Publications

Here is a list of our publications

  • Schweizer, Manuel; Warmuth, Vera; Kakhki, Niloofar Alaei; Aliabadian, Mansour et al.

    Parallel plumage colour evolution and introgressive hybridization in wheatears

    Part of Journal of Evolutionary Biology, p. 100-110, 2019.

  • Ekmansalen, Norbyvägen 14 A, Uppsala 2019-02-25 13:00

    Weissensteiner, Matthias H.

    Evolutionary genomics in Corvids: – From single nucleotides to structural variants

    Open access
  • Gunnarsson, Karl; Ekblom, Robert

    Review of the diet specialisation of the Blue-cheeked bee-eater (Merops persicus)

    Part of Journal of Ornithology, p. 275-279, 2019.

  • Bayram, Helen L.; Sayadi, Ahmed; Immonen, Elina; Arnqvist, Göran et al.

    Identification of novel ejaculate proteins in a seed beetle and division of labour across male accessory reproductive glands

    Part of Insect biochemistry and molecular biology, p. 50 50-57 57, 2019.

  • Hooper, Rebecca; Brealey, Jaelle C.; van der Valk, Tom; Alberdi, Antton et al.

    Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

    Part of Molecular Ecology, p. 484-502, 2019.

  • Bolivar, Paulina; Gueguen, Laurent; Duret, Laurent; Ellegren, Hans et al.

    GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

    Part of Genome Biology, 2019.

    Open access
  • Ramnarine, Timothy J. S.; Glaser-Schmitt, Amanda; Catalan, Ana; Parsch, John et al.

    Population Genetic and Functional Analysis of a cis-Regulatory Polymorphism in the Drosophila melanogaster Metallothionein A gene

    Part of Genes, 2019.

    Open access
  • Knief, Ulrich; Bossu, Christen M.; Saino, Nicola; Hansson, Bengt et al.

    Epistatic mutations under divergent selection govern phenotypic variation in the crow hybrid zone

    Part of Nature Ecology & Evolution, p. 570-576, 2019.

  • Alavioon, Ghazal; Garcia, Andrea Cabrera; LeChatelier, Magali; Maklakov, Alex A. et al.

    Selection for longer lived sperm within ejaculate reduces reproductive ageing in offspring

    Part of EVOLUTION LETTERS, p. 198 198-206 206, 2019.

    Open access
  • Suh, Alexander

    Genome Size Evolution: Small Transposons with Large Consequences

    Part of Current Biology, p. R241-R243, 2019.

  • Wu, Chi-Chih; Klaesson, Axel; Buskas, Julia; Ranefall, Petter et al.

    In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation

    Part of Journal of Experimental Biology, 2019.

  • Richert, Inga; Yager, Patricia L.; Dinasquet, Julie; Logares, Ramiro et al.

    Summer comes to the Southern Ocean: How phytoplankton shape bacterioplankton communities far into the deep dark sea

    Part of Ecosphere, 2019.

    Open access
  • Warmuth, Vera; Ellegren, Hans

    Genotype-free estimation of allele frequencies reduces bias and improves demographic inference from RADSeq data

    Part of Molecular Ecology Resources, p. 586-596, 2019.

  • Hart, Michael W.; Stover, Daryn A.; Guerra, Vanessa; Mozaffari, Sahar V. et al.

    Positive selection on human gamete-recognition genes

    Part of PeerJ, 2018.

    Open access
  • Suh, Alexander; Smeds, Linnea; Ellegren, Hans

    Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes

    Part of Molecular Ecology, p. 99-111, 2018.

    Open access
  • Kardos, Marty; Åkesson, Mikael; Fountain, Toby; Flagstad, Oystein et al.

    Genomic consequences of intensive inbreeding in an isolated wolf population

    Part of Nature Ecology & Evolution, p. 124-131, 2018.

  • Burdon, Rosalie C. F.; Junker, Robert R.; Scofield, Douglas; Parachnowitsch, Amy L. et al.

    Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool

    Part of Chemoecology, p. 11-19, 2018.

    Open access
  • Craig, Rory J.; Suh, Alexander; Wang, Mi; Ellegren, Hans et al.

    Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis)

    Part of Molecular Ecology, p. 476-492, 2018.

    Open access
  • Valdiosera, Cristina; Günther, Torsten; Carlos Vera-Rodriguez, Juan; Urena, Irene et al.

    Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia

    Part of Proceedings of the National Academy of Sciences of the United States of America, p. 3428-3433, 2018.

  • Onuţ-Brännström, Ioana; Benjamin, Mitchell; Scofield, Douglas G.; Starri, Heiðmarsson et al.

    Sharing of photobionts in sympatric populations of Thamnolia and Cetraria lichens: evidence from high-throughput sequencing

    Part of Scientific Reports, 2018.

    Open access
  • Urbina, Hector; Breed, Martin F.; Zhao, Weizhou; Gurrala, Kanaka Lakshmi et al.

    Specificity in Arabidopsis thaliana recruitment of root fungal communities from soil and rhizosphere

    Part of Fungal Biology, p. 231-240, 2018.

  • Nieuwenhuis, Bart P. S.; Tusso Gomez, Sergio; Bjerling, Pernilla; Stångberg, Josefine et al.

    Repeated evolution of self-compatibility for reproductive assurance

    Part of Nature Communications, 2018.

    Open access
  • Fountain, Toby; Husby, Arild; Nonaka, Etsuko; Dileo, Michelle F. et al.

    Inferring dispersal across a fragmented landscape using reconstructed families in the Glanville fritillary butterfly

    Part of Evolutionary Applications, p. 287-297, 2018.

    Open access
  • Marsit, Souhir; Dion-Côté, Anne-Marie; Barbash, Daniel A.

    Did Mitochondria Kill the Frog?

    Part of Developmental Cell, p. 539-541, 2018.

  • Holt, Carson; Campbell, Michael; Keays, David A.; Edelman, Nathaniel et al.

    Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia)

    Part of G3, p. 1391-1398, 2018.

    Open access
  • Immonen, Elina; Hämäläinen, Anni; Schuett, Wiebke; Tarka, Maja et al.

    Evolution of sex-specific pace-of-life syndromes: genetic architecture and physiological mechanisms

    Part of Behavioral Ecology and Sociobiology, 2018.

    Open access
  • Hämäläinen, Anni; Immonen, Elina; Tarka, Maja; Schuett, Wiebke et al.

    Evolution of sex-specific pace-of-life syndromes: causes and consequences

    Part of Behavioral Ecology and Sociobiology, 2018.

  • Wang, Jing; Ding, Jihua; Tan, Biyue; Robinson, Kathryn M. et al.

    A major locus controls local adaptation and adaptive life history variation in a perennial plant

    Part of Genome Biology, 2018.

    Open access
  • Leal, Luis; Talla, Venkat; Källman, Thomas; Friberg, Magne et al.

    Gene expression profiling across ontogenetic stages in the wood white (Leptidea sinapis) reveals pathways linked to butterfly diapause regulation

    Part of Molecular Ecology, p. 935-948, 2018.

  • Peona, Valentina; Weissensteiner, Matthias; Suh, Alexander

    How complete are "complete" genome assemblies? - An avian perspective

    Part of Molecular Ecology Resources, 2018.

    Open access
  • Dinets, Vladimir; Sokolovskis, Kristaps; Hanley, Daniel; Hauber, Mark E. et al.

    Striking difference in response to expanding brood parasites by birds in western and eastern Beringia

    Part of Journal of field ornithology, p. 117-125, 2018.

  • Zamora, Juan Carlos; Svensson, Måns; Kirschner, Roland; Olariaga, Ibai et al.

    Considerations and consequences of allowing DNA sequence data as types of fungal taxa

    Part of IMA Fungus, p. 167-185, 2018.

    Open access
  • Dahlö, Martin; Scofield, Douglas; Schaal, Wesley; Spjuth, Ola et al.

    Tracking the NGS revolution: managing life science research on shared high-performance computing clusters

    Part of GigaScience, 2018.

    Open access
  • Silva, Willian T. A. F.

    Methylation dynamics during the maternal-to-zygotic genome transition in dioecious species

    Part of PLoS ONE, 2018.

    Open access
  • Lundregan, Sarah L.; Hagen, Ingerid J.; Gohli, Jostein; Niskanen, Alina K. et al.

    Inferences of genetic architecture of bill morphology in house sparrow using a high-density SNP array point to a polygenic basis

    Part of Molecular Ecology, p. 3498-3514, 2018.

  • Lindahlsalen, Evolutionary Biology Centre, Norbyvagan 18, Uppsala 2018-10-19 10:15

    Talla, Venkat

    Speciation genetics of recently diverged species:

    Open access
  • Lindahlsalen, Norbyvägen 18A, Uppsala 2018-11-07 09:00

    Silva, Willian T. A. F.

    Non-genetic processes in development and heredity

    Open access
  • George, T. S.; Giles, C. D.; Menezes-Blackburn, D.; Condron, L. M. et al.

    Correction to: Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities

    Part of Plant and Soil, p. 209-211, 2018.

  • George, T. S.; Giles, C. D.; Menezes-Blackburn, D.; Condron, L. M. et al.

    Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities

    Part of Plant and Soil, p. 191-208, 2018.

  • Humble, Emily; Dasmahapatra, Kanchon K.; Martínez Barrio, Álvaro; Gregorio, Ines et al.

    RAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding

    Part of G3, p. 2709-2722, 2018.

  • Anderson, Jennifer L; Nieuwenhuis, Bart P. S.; Johannesson, Hanna

    Asexual reproduction and growth rate: independent and plastic lifehistory traits in Neurospora crassa

    Part of The ISME Journal, 2018.

    Open access
  • Guichard, Etienne; Peona, Valentina; Tagliazucchi, Guidantonio Malagoli; Abitante, Lucia et al.

    Impact of non-LTR retrotransposons in the differentiation and evolution of anatomically modern humans

    Part of Mobile DNA, 2018.

    Open access
  • Dutoit, Ludovic; Mugal, Carina; Bolivar, Paulina; Wang, Mi et al.

    Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome

    Part of Molecular Ecology, p. 3572-3581, 2018.

    Open access
  • Connallon, Tim; Olito, Colin; Dutoit, Ludovic; Papoli, Homa et al.

    Local adaptation and the evolution of inversions on sex chromosomes and autosomes

    Part of Philosophical Transactions of the Royal Society of London. Biological Sciences, 2018.

  • Ekmansalen, EBC, Norrbyvägen 14, Uppsala 2018-11-09 09:00

    Bogusz, Marcin

    Evolutionary Approaches to Sequence Alignment

    Open access
  • Ricci, Marco; Peona, Valentina; Guichard, Etienne; Taccioli, Cristian et al.

    Transposable Elements Activity is Positively Related to Rate of Speciation in Mammals

    Part of Journal of Molecular Evolution, p. 303-310, 2018.

    Open access
  • Ricci, Marco; Peona, Valentina; Guichard, Etienne; Taccioli, Cristian et al.

    Correction to: Transposable Elements Activity is Positively Related to Rate of Speciation in Mammals

    Part of Journal of Molecular Evolution, p. 311-311, 2018.

  • Wang, Mi; Uebbing, Severin; Pawitan, Yudi; Scofield, Douglas G. et al.

    RPASE: Individual-based allele-specific expression detection without prior knowledge of haplotype phase

    Part of Molecular Ecology Resources, p. 1247-1262, 2018.

  • Bauerfeind, Stephanie S.; Schaefer, Martin A.; Berger, David; Blanckenhorn, Wolf U. et al.

    Replicated latitudinal clines in reproductive traits of European and North American yellow dung flies

    Part of Oikos, p. 1619-1632, 2018.

  • Whelan, Simon; Irisarri, Iker; Burki, Fabien

    PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences

    Part of Bioinformatics, p. 3929-3930, 2018.